Glyma07g07410 - SoyBase

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Report for Sequence Feature Glyma07g07410

Feature Type:	gene_model
Chromosome:	Gm07
Start:	6107440
stop:	6109415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g07410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00310	AT	Annotation by Michelle Graham. TAIR10: Putative membrane lipoprotein \| chr4:133857-135235 FORWARD LENGTH=302	SoyBase	E_val: 1.00E-25	ISS
GO:0009561	GO-bp	Annotation by Michelle Graham. GO Biological Process: megagametogenesis	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010564	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KI73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI73_SOYBN	SoyBase	E_val: 5.00E-163	ISS
UniRef100_Q2HW76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HMG-I and HMG-Y, DNA-binding n=1 Tax=Medicago truncatula RepID=Q2HW76_MEDTR	SoyBase	E_val: 2.00E-34	ISS

Expression Patterns of Glyma07g07410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g07410 not represented in the dataset	Glyma07g07410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g07410

Paralog	Evidence	Comments
Glyma16g03820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g07410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g068200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g07410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g07410

Limit To All Plant Sequences

>Glyma07g07410.2   sequence type=transcript   gene model=Glyma07g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGAAGCAAAGAGAAAAAAACCCTGATTACCAGCCATCGAGGTGAGTGAGATCTGCGAGAGAAGAGAAACAAAGGCTCGAGCCCCAAACGAATAGTGTTCCATTTCCCCCTGAGATATTACATATAAAATCCCATTTCTACCCATCCATTTGGCGGAAGTAACAAAAAAGGTTTATCTTTATCATGAGGATCCGCAAGAACGCCAAGCTTTCCCCTCTTCTCTTCTCGTCGTCTTCGTGTCTCCAAGGTGGTTCGGTTCCGCTGGAGACCCACGTGTGCCAGTTGAACCAGTCCCCGTGGGATGTGATCCCCTTTGACTCTGACTCCATCCAGCGTCGCGTCGATGATGGATGCAGATAAAACTTCTTACCACTCGACTCTAGTGGTTGATGTGGCGCCGATAAATATCGACGCTACAACAAACATGACCAATCCTTGTCAGTTTAATGATAAGGGTTGGCCATGTATGAATGAAGTCAGACAAGGGCAATCATTCTGCGAGCAACATTTATCTTATTCTCTGCTCACTCCCCACCACCACACCAGCAAGAAACCACAAGCGCAAGCTCAACCATCCGCCCCTGGAACTCGCCGTGGCAAGCCTCGGGGAGCGGCGGGGAAGAAGGCGGCTGCGGGGGCGGGGGCAAGTTCGAACCCGTATGAATTCTACTACTACTCCGGGTTCGGGCCCCTGTGGGGCAAACGAAGAGGAGATAGAAATGGAGGAGAAGGGAGCAAGAATAGTAGTGTTGGGGTCGAGAATTCGACAATGGTGGAGTCCAAGAATGGAGTGGGTGGTGCTGACGATGGTATTAATGATAATGTGGCGAGCGTTGAGGTTGGTCCTTCGGTTTCGGAGATGGAGCATGAGGGGATTATCGACTATGTGGATGATGACGAAGAAGAAGAAGGAGAAGAAGAGGGTGTCGACGATAGCGGGAAGAAGCGAATGAGGAAGCCCGTGAAAGCAAGGTCGCTGAAATCGCTGATGTGAAGAAATGAAGAAAGAAAGAAAGAAAAAATAGTGGGTAACGAGATATAGTAAGATCGAGGGTTGGGGTTCAATGTCTTTTGTTATATTATTATTATTATTATCGTAATTTGTTGTTCTTGTCTTTTTATTATTTTTATTTTTCGGAGTTGTGTTGGGGGTGGGATATTTAGGGTTATGAAAATAATGATGTAATTTTGGTTTCACATGACGAAGTGTTAGTTCGCGGGTGAGGTTAGTCTTGCCAACGTGACTGTAGGGGTTTTATTCTAGCGGAAAGGAGGTGGACCGTAAAATTTCTGTGTTTGAAAAGGAAAGGGTGTAATGGTAAATTGAACATGTGGATTTTAGAGTAGTTTTTTTTATTTTTCTCAAGGTGGTTCGTTTTTTACTTTGATATTTATTATATCTCGAAGCTTTATCCAGAAGTGGTGGATTGGACTTTATTAATTGGCAGTTATATCCATGCAAAAATATACTGTGGGCCACTCTGGCAGCATATTTTGAAAGTTTTCTTTTTTTTCGGGTGATCTTGATTTTTTTTTTCTTCAAAAAACGGCATTTGCT

Coding sequences of Glyma07g07410

Limit To All Plant Sequences

>Glyma07g07410.1   sequence type=CDS   gene model=Glyma07g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATCCGCAAGAACGCCAAGCTTTCCCCTCTTCTCTTCTCGTCGTCTTCGTGTCTCCAAGGTGGTTCGGTTCCGCTGGAGACCCACGTGTGCCAGTTGAACCAGTCCCCGTGGGATGTGATCCCCTTTGACTCTGACTCCATCCAGTTCCAGCTCGACCACAGCTTCGCCGCTGGAAACAACAATGGCAGCGCCGAAAATTCCTTCGGCGCCGTCGAGAGCGTCGCGTCGATGATGGATGCAGATAAAACTTCTTACCACTCGACTCTAGTGGTTGATGTGGCGCCGATAAATATCGACGCTACAACAAACATGACCAATCCTTGTCAGTTTAATGATAAGGGTTGGCCATGTATGAATGAAGTCAGACAAGGGCAATCATTCTGCGAGCAACATTTATCTTATTCTCTGCTCACTCCCCACCACCACACCAGCAAGAAACCACAAGCGCAAGCTCAACCATCCGCCCCTGGAACTCGCCGTGGCAAGCCTCGGGGAGCGGCGGGGAAGAAGGCGGCTGCGGGGGCGGGGGCAAGTTCGAACCCGTATGAATTCTACTACTACTCCGGGTTCGGGCCCCTGTGGGGCAAACGAAGAGGAGATAGAAATGGAGGAGAAGGGAGCAAGAATAGTAGTGTTGGGGTCGAGAATTCGACAATGGTGGAGTCCAAGAATGGAGTGGGTGGTGCTGACGATGGTATTAATGATAATGTGGCGAGCGTTGAGGTTGGTCCTTCGGTTTCGGAGATGGAGCATGAGGGGATTATCGACTATGTGGATGATGACGAAGAAGAAGAAGGAGAAGAAGAGGGTGTCGACGATAGCGGGAAGAAGCGAATGAGGAAGCCCGTGAAAGCAAGGTCGCTGAAATCGCTGATGTGA

>Glyma07g07410.2   sequence type=CDS   gene model=Glyma07g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGCAGATAAAACTTCTTACCACTCGACTCTAGTGGTTGATGTGGCGCCGATAAATATCGACGCTACAACAAACATGACCAATCCTTGTCAGTTTAATGATAAGGGTTGGCCATGTATGAATGAAGTCAGACAAGGGCAATCATTCTGCGAGCAACATTTATCTTATTCTCTGCTCACTCCCCACCACCACACCAGCAAGAAACCACAAGCGCAAGCTCAACCATCCGCCCCTGGAACTCGCCGTGGCAAGCCTCGGGGAGCGGCGGGGAAGAAGGCGGCTGCGGGGGCGGGGGCAAGTTCGAACCCGTATGAATTCTACTACTACTCCGGGTTCGGGCCCCTGTGGGGCAAACGAAGAGGAGATAGAAATGGAGGAGAAGGGAGCAAGAATAGTAGTGTTGGGGTCGAGAATTCGACAATGGTGGAGTCCAAGAATGGAGTGGGTGGTGCTGACGATGGTATTAATGATAATGTGGCGAGCGTTGAGGTTGGTCCTTCGGTTTCGGAGATGGAGCATGAGGGGATTATCGACTATGTGGATGATGACGAAGAAGAAGAAGGAGAAGAAGAGGGTGTCGACGATAGCGGGAAGAAGCGAATGAGGAAGCCCGTGAAAGCAAGGTCGCTGAAATCGCTGATGTGA

Predicted protein sequences of Glyma07g07410

Limit To All Plant Sequences

>Glyma07g07410.1   sequence type=predicted peptide   gene model=Glyma07g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIRKNAKLSPLLFSSSSCLQGGSVPLETHVCQLNQSPWDVIPFDSDSIQFQLDHSFAAGNNNGSAENSFGAVESVASMMDADKTSYHSTLVVDVAPINIDATTNMTNPCQFNDKGWPCMNEVRQGQSFCEQHLSYSLLTPHHHTSKKPQAQAQPSAPGTRRGKPRGAAGKKAAAGAGASSNPYEFYYYSGFGPLWGKRRGDRNGGEGSKNSSVGVENSTMVESKNGVGGADDGINDNVASVEVGPSVSEMEHEGIIDYVDDDEEEEGEEEGVDDSGKKRMRKPVKARSLKSLM*

>Glyma07g07410.2   sequence type=predicted peptide   gene model=Glyma07g07410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDADKTSYHSTLVVDVAPINIDATTNMTNPCQFNDKGWPCMNEVRQGQSFCEQHLSYSLLTPHHHTSKKPQAQAQPSAPGTRRGKPRGAAGKKAAAGAGASSNPYEFYYYSGFGPLWGKRRGDRNGGEGSKNSSVGVENSTMVESKNGVGGADDGINDNVASVEVGPSVSEMEHEGIIDYVDDDEEEEGEEEGVDDSGKKRMRKPVKARSLKSLM*

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