SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61490 | AT | Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein | chr3:22758439-22760137 FORWARD LENGTH=476 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0004650 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity | SoyBase | N/A | ISS |
| PF00295 | PFAM | Glycosyl hydrolases family 28 | JGI | ISS | |
| UniRef100_G7KS69 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase-like protein n=2 Tax=Medicago RepID=G7KS69_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KI61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KI61_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g07290 not represented in the dataset |
Glyma07g07290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g067000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g07290.2 sequence type=transcript gene model=Glyma07g07290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTTAATTAACGTTTTAGACATTGAAATAATAATAATTGTCTAATCAAGAATAAACATCAGTCTTTTGAATTTTGAGAATTCATGCATGAACCTGTTAGCCATAACTAAATTTTCACAATAAATACTTGACATAGCCTCACTCTCCACATTTTCCTCAAACAACTAGCAAAGTGTCTGTGCTCTTGTGGAAAGCTCACATGAGGGTAATTAGATTGGTTTGTGCTCTCCTTTTGGCAACACTGGTGAGCTCAGAGGCAACTGAGAGAAAAGCCAAAATTGTTGACACTTCCTTTGAGTACAATGCCTTAAATTGCAGGGCTCATAGTGCTTCATTGACTGATTTTGGTGGTGTTGGAGATGGAAATACATCAAACACAAAGGCCTTTCAGTCTGCAATCAGTTATCTGAGTCAGTATGCTTCTAAAGGGGGAGCTCAGCTGTATGTTCCTGCTGGAAAATGGCTTACAGGGAGTTTTAGTATGACCAGTCATTTCACTTTGTATCTAAACAAAGATGCTGTTCTCCTTGCTTCTCAGGATATGAATGAGTGGCCTGTGATCAAGCCACTCCCATCATACGGTAGAGGAAGAGACGCACCAGCGGGAAGATACACCAGCTTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGGGACAATGGCACCATAGATGGTCAAGGAGCATTTTGGTGGCAGCAATTTTACAACAAAAGGTTGAACTATACTCGACCCTACCTGATTGAATTAATGTTCTCAGACAAGATTCAAATCTCCAATCTAACGTTCCTGAATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGCAATATTATTATTAAGGGCCTCACCATCATCGCTCCTGTCCCATCTCCAAACACAGATGGCATTAATCCAGATTCTTGCACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAAAAGTGGGTGGGATGAGTTTGGCATAAAGTTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCTCCACAAAGTGCAGCCATTGCCTTAGGGAGTGAAATGTCAGGTGGAATTCAAGATGTTAGAGCTGAGGACATTACAGCCATCCACACAGAATCAGGTGTCAGAATCAAGACATCAATAGGGAGAGGAGGGTATGTGAAGGACATATATGTTAGAAGAATGACCATGCATACCATGAAATGGGCATTTTGGATGACTGGTAACTATGGTTCCTATGCTAATAACAGCCACTATGATCCTAAAGCCTTGCCTGAGATCAAAGGCATTAACTATAGAGATGTGGTGGCTGATAATGTGACCATGGCTGCTACCTTGGAAGGAATCTCCAATAGCCCTTTTACTGGAATCTGCATTGCTAATGTGACAATTAGCATGGCAGACAAAGCCAATGAAAAGCCATGGACATGCACTGATATTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTCTTTACTTGATAAGGGGCCGGAGAAAATCAAAACATGTGATTTTCCCCCAGAGATTCTACCAATTGATTTGTTAGAGCTTAAGAAGTGTACTTATAACATTAAGCATGCATGACTCTTATTATGTTAAGATGTGTCATATATTTGTTTGTTTAAGGCTAGTCTTTCCCATCTTATTTAGAAATATTAATCGTTGTTCTAATGATTTTACAAAATACAATTATGCATAGTTACGACT
>Glyma07g07290.1 sequence type=CDS gene model=Glyma07g07290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGTACAAGTAATTAGATTGGTTTGTGCTCTCCTTTTGGCAACACTGGTGAGCTCAGAGGCAACTGAGAGAAAAGCCAAAATTGTTGACACTTCCTTTGAGTACAATGCCTTAAATTGCAGGGCTCATAGTGCTTCATTGACTGATTTTGGTGGTGTTGGAGATGGAAATACATCAAACACAAAGGCCTTTCAGTCTGCAATCAGTTATCTGAGTCAGTATGCTTCTAAAGGGGGAGCTCAGCTGTATGTTCCTGCTGGAAAATGGCTTACAGGGAGTTTTAGTATGACCAGTCATTTCACTTTGTATCTAAACAAAGATGCTGTTCTCCTTGCTTCTCAGGATATGAATGAGTGGCCTGTGATCAAGCCACTCCCATCATACGGTAGAGGAAGAGACGCACCAGCGGGAAGATACACCAGCTTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGGGACAATGGCACCATAGATGGTCAAGGAGCATTTTGGTGGCAGCAATTTTACAACAAAAGGTTGAACTATACTCGACCCTACCTGATTGAATTAATGTTCTCAGACAAGATTCAAATCTCCAATCTAACGTTCCTGAATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGCAATATTATTATTAAGGGCCTCACCATCATCGCTCCTGTCCCATCTCCAAACACAGATGGCATTAATCCAGATTCTTGCACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAAAAGTGGGTGGGATGAGTTTGGCATAAAGTTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCTCCACAAAGTGCAGCCATTGCCTTAGGGAGTGAAATGTCAGGTGGAATTCAAGATGTTAGAGCTGAGGACATTACAGCCATCCACACAGAATCAGGTGTCAGAATCAAGACATCAATAGGGAGAGGAGGGTATGTGAAGGACATATATGTTAGAAGAATGACCATGCATACCATGAAATGGGCATTTTGGATGACTGGTAACTATGGTTCCTATGCTAATAACAGCCACTATGATCCTAAAGCCTTGCCTGAGATCAAAGGCATTAACTATAGAGATGTGGTGGCTGATAATGTGACCATGGCTGCTACCTTGGAAGGAATCTCCAATAGCCCTTTTACTGGAATCTGCATTGCTAATGTGACAATTAGCATGGCAGACAAAGCCAATGAAAAGCCATGGACATGCACTGATATTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTCTTTACTTGATAAGGGGCCGGAGAAAATCAAAACATGTGATTTTCCCCCAGAGATTCTACCAATTGATTTGTTAGAGCTTAAGAAGTGTACTTATAACATTAAGCATGCATGA >Glyma07g07290.2 sequence type=CDS gene model=Glyma07g07290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGTAATTAGATTGGTTTGTGCTCTCCTTTTGGCAACACTGGTGAGCTCAGAGGCAACTGAGAGAAAAGCCAAAATTGTTGACACTTCCTTTGAGTACAATGCCTTAAATTGCAGGGCTCATAGTGCTTCATTGACTGATTTTGGTGGTGTTGGAGATGGAAATACATCAAACACAAAGGCCTTTCAGTCTGCAATCAGTTATCTGAGTCAGTATGCTTCTAAAGGGGGAGCTCAGCTGTATGTTCCTGCTGGAAAATGGCTTACAGGGAGTTTTAGTATGACCAGTCATTTCACTTTGTATCTAAACAAAGATGCTGTTCTCCTTGCTTCTCAGGATATGAATGAGTGGCCTGTGATCAAGCCACTCCCATCATACGGTAGAGGAAGAGACGCACCAGCGGGAAGATACACCAGCTTCATATTTGGAACAAACCTCACTGATGTTATTGTCACAGGGGACAATGGCACCATAGATGGTCAAGGAGCATTTTGGTGGCAGCAATTTTACAACAAAAGGTTGAACTATACTCGACCCTACCTGATTGAATTAATGTTCTCAGACAAGATTCAAATCTCCAATCTAACGTTCCTGAATTCTCCATCATGGAATGTTCATCCTGTTTATAGCAGCAATATTATTATTAAGGGCCTCACCATCATCGCTCCTGTCCCATCTCCAAACACAGATGGCATTAATCCAGATTCTTGCACAAATACCAGAATTGAAGACTGCTACATAGTTTCTGGGGATGACTGTGTGGCAGTGAAAAGTGGGTGGGATGAGTTTGGCATAAAGTTTGGATGGCCCACAAAACAACTAGTAATCAGAAGGCTGACATGCATTTCTCCACAAAGTGCAGCCATTGCCTTAGGGAGTGAAATGTCAGGTGGAATTCAAGATGTTAGAGCTGAGGACATTACAGCCATCCACACAGAATCAGGTGTCAGAATCAAGACATCAATAGGGAGAGGAGGGTATGTGAAGGACATATATGTTAGAAGAATGACCATGCATACCATGAAATGGGCATTTTGGATGACTGGTAACTATGGTTCCTATGCTAATAACAGCCACTATGATCCTAAAGCCTTGCCTGAGATCAAAGGCATTAACTATAGAGATGTGGTGGCTGATAATGTGACCATGGCTGCTACCTTGGAAGGAATCTCCAATAGCCCTTTTACTGGAATCTGCATTGCTAATGTGACAATTAGCATGGCAGACAAAGCCAATGAAAAGCCATGGACATGCACTGATATTGAAGGGATCACAAGTGGGGTGACTCCTAAGCCATGCAATTCTTTACTTGATAAGGGGCCGGAGAAAATCAAAACATGTGATTTTCCCCCAGAGATTCTACCAATTGATTTGTTAGAGCTTAAGAAGTGTACTTATAACATTAAGCATGCATGA
>Glyma07g07290.1 sequence type=predicted peptide gene model=Glyma07g07290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVQVIRLVCALLLATLVSSEATERKAKIVDTSFEYNALNCRAHSASLTDFGGVGDGNTSNTKAFQSAISYLSQYASKGGAQLYVPAGKWLTGSFSMTSHFTLYLNKDAVLLASQDMNEWPVIKPLPSYGRGRDAPAGRYTSFIFGTNLTDVIVTGDNGTIDGQGAFWWQQFYNKRLNYTRPYLIELMFSDKIQISNLTFLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEFGIKFGWPTKQLVIRRLTCISPQSAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTSIGRGGYVKDIYVRRMTMHTMKWAFWMTGNYGSYANNSHYDPKALPEIKGINYRDVVADNVTMAATLEGISNSPFTGICIANVTISMADKANEKPWTCTDIEGITSGVTPKPCNSLLDKGPEKIKTCDFPPEILPIDLLELKKCTYNIKHA* >Glyma07g07290.2 sequence type=predicted peptide gene model=Glyma07g07290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRVIRLVCALLLATLVSSEATERKAKIVDTSFEYNALNCRAHSASLTDFGGVGDGNTSNTKAFQSAISYLSQYASKGGAQLYVPAGKWLTGSFSMTSHFTLYLNKDAVLLASQDMNEWPVIKPLPSYGRGRDAPAGRYTSFIFGTNLTDVIVTGDNGTIDGQGAFWWQQFYNKRLNYTRPYLIELMFSDKIQISNLTFLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEFGIKFGWPTKQLVIRRLTCISPQSAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTSIGRGGYVKDIYVRRMTMHTMKWAFWMTGNYGSYANNSHYDPKALPEIKGINYRDVVADNVTMAATLEGISNSPFTGICIANVTISMADKANEKPWTCTDIEGITSGVTPKPCNSLLDKGPEKIKTCDFPPEILPIDLLELKKCTYNIKHA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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