SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G61530 | AT | Annotation by Michelle Graham. TAIR10: Phosphoenolpyruvate carboxylase family protein | chr3:22771692-22773313 REVERSE LENGTH=354 | SoyBase | E_val: 0 | ISS |
| GO:0015940 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pantothenate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0003864 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG2949 | KOG | Ketopantoate hydroxymethyltransferase | JGI | ISS | |
| PTHR20881 | Panther | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE | JGI | ISS | |
| PF02548 | PFAM | Ketopantoate hydroxymethyltransferase | JGI | ISS | |
| UniRef100_G7KT22 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Medicago truncatula RepID=G7KT22_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233895E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233895E related cluster n=1 Tax=unknown RepID=UPI000233895E | SoyBase | E_val: 0 | ISS |
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Glyma07g06950 not represented in the dataset |
Glyma07g06950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g064600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g06950.1 sequence type=CDS gene model=Glyma07g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGTTTGTTGAGAGCGAGAAACCCCTGTTACTCTCTGATGAGGCGCATTCGAATCCGGTGCATGAGCAACGTTCCCGAGAACACGGTGTATTCGGGGCCCACCTCGCAGAGCTCGACCAAGCGCGTCACGCTGAGCCAGTTGCGCCAGAAGCACCGCGCCTCCCAGCCCATCACCATGGTCACCGCCTACGACTACCCCGCCGCGGTGCACCTCGATACCGCCGGCGTCGACATCTGTCTCGTCGGCGACTCTGCGGCGATGGTGGTCCACGGCCATGACACCACTCTCCCCATCACGCTCGAGGAGATGCTCGTCCACTGCCGCGCCGTGGCGCGTGGAGCCAAGACGCCGCTTCTCGTTGGGGACTTGGCTTTTGGGACCTACGAGTCCAGCTCCAATCAGGCGGTGGATACTGCGGTTCGTATGTTGAAAGAAGGGGGAATGGATGCCATAAAACTGGAGGGAGGGTCGCCTTCGAGAATTGTTGCAGCAAAGGCTATTGTTGAGGCTGGAATTGCTGTCATGGGCCATGTAGGCCTTACTCCCCAGGCCATTAGTGTTTTAGGGGGGTTTAGACCTCAAGGAAAGAATGTTGCTAGTGCTGTCAAGGTTGTAGAGACAGCGTTGGCTTTACAAGAAGCAGGGTGCTTTTCCGTTGTTCTAGAGTGTGTGCCTGCACCGGTTGCGGCTGCAACCACGGCAACCCTTCAAATTCCTACAATTGGAATTGGGGCTGGACCCTTTTGCAGTGGACAAGTGCTAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAGGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATAAAGCCTTACTGGAGTATAAGGAGGACGTGATAAATGGTTCATTTCCTGATGCTCACCATAGTCCATACAAAATCAGCAAAACAGATGCAGATGTTTTCTCAACTGAGTTGCAAAGGTTAGGTCTAGACAAGGCAGCATCTGCAGCATCTGAAGCAGTTCAGAAGATGGATACAACCAAATCAACTAGTGAAGGGAAACAAACAAAATAA
>Glyma07g06950.1 sequence type=predicted peptide gene model=Glyma07g06950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACLLRARNPCYSLMRRIRIRCMSNVPENTVYSGPTSQSSTKRVTLSQLRQKHRASQPITMVTAYDYPAAVHLDTAGVDICLVGDSAAMVVHGHDTTLPITLEEMLVHCRAVARGAKTPLLVGDLAFGTYESSSNQAVDTAVRMLKEGGMDAIKLEGGSPSRIVAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVASAVKVVETALALQEAGCFSVVLECVPAPVAAATTATLQIPTIGIGAGPFCSGQVLVYHDLLGMLQHPHHAKVTPKFCKQYARVGDVINKALLEYKEDVINGSFPDAHHSPYKISKTDADVFSTELQRLGLDKAASAASEAVQKMDTTKSTSEGKQTK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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