SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46240 | AT | Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 6 | chr2:18986586-18989827 FORWARD LENGTH=1043 | SoyBase | E_val: 2.00E-49 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0012502 | GO-bp | Annotation by Michelle Graham. GO Biological Process: induction of programmed cell death | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0042542 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| PF02179 | PFAM | BAG domain | JGI | ISS | |
| UniRef100_I1KI14 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI14_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_O82345 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: BAG family molecular chaperone regulator 6 n=1 Tax=Arabidopsis thaliana RepID=BAG6_ARATH | SoyBase | E_val: 8.00E-47 | ISS |
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Glyma07g06750 not represented in the dataset |
Glyma07g06750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g03320 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g061500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g06750.2 sequence type=CDS gene model=Glyma07g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGCCTGCATACAGAAGCATGGACTCGTACCCATGTCAGAGAAACCAAATACCTTTCCCTCATTATTATCATCCAGGCATTGAAGCTATTCCCCCTCAAATGAAGCTTGATCCATCCAAACCACCCTTTTCTTATGACCAACATTGGCCCTATGCCGGCAATTTTGGGCACCCTACTTCCCCACATTTCTGCTGTGGCCACAACAACTTCCCTTGTCATTATAGCTACATGCCTTCATATCCTCATGCCCCTTCTCCAATGTACTATTCTGGAACTTGTCCTTCATATAGTGAACCATATTTTGTTCCTTATTCCCCACAACCACATTATACCATGGAGCTGCCTAGGTATGAAAATGACAAATGCATGCCCCGAGAGCTTCATTGTTCTGGTTCTGCTAATCATCCATGCAACCAAAAGGAAGGTAGAAGTGTGAAGATTGAAGAGCATGAACTGGATGGTGGAAAGAAAGAGAATGATGCTTTGGTCCCAATTCAGCTCAAGAATTATCCATATCCCTTAGTTTGGATTCCACAGGAGTACACAAGTAACAAACAGCTGAAAAATCCTAGTACAATGGAAGTTCGTGAACAAAACAAGCCTTCTAGTCTTGAGAATTCTAATGTTGATGCGCAGCCAACACAGGAGCCTATAGTATGGAATGGATGGCTTCCCTTCAATATAAAGGGTGCCCGGAACATGATTCACGATGGATATGGAACAAGAAACCAGAAACAGGAGTCTGGCAATAATAGAGGGGAATCTGAAAATGGAAAAATAGACCAGAAACATCAAAGTGAACAGAAGAGGTCAGAATTCCCATTCCCTATCTTCTGGTTGCCTTATTACAATAAGCAGGAGGAGAGTGGAGAGACTAAGAACCAGGAGAAAAACATTTCTTCACCAAAAATTGTTGAGGAGGTACCCCATACATTCAAATTTGTTCCAGTGAAGTCTCATGTTGATGAAGGTGGTAGGAACAGAACCGGATCAAATCAAGCTGATCAATCCACAAATACAAATGCTTCTTCGGATGCTGTAGAGAAAGTGAATAATGCCAGAAGCATACCTGTGAAGCAGATAGAATCCCACGAAGGAAAAAATGTTTCTCTCGATCAAATGGAAGAGAATGTGACACAAAAGGACTCTTGCACTGGGGACAAAAAGAGACAATCTACATCTTCACCTAAAGGATCCAAGTTACCTCCGGTTTGTCTGAGAGTTGATCCACTACCAAGGAAGAAAAATGGCCACGGGAGTTCGAGTTCGAGGTCCCCAAGTCCACCTTCATCAAAAGGGAATTCCCAAGCTACAACTGGTGAAACATTCAAGACTCCTGTGAGTGGCACACATGACAAGGCTCAGCCAAATTTGAATCATCAGAATGCTCCAAACACCAGTGAGAAAGTTAAACCAAAGGAGAACACCATTCCGGTGTCAGAATGCATGACTAATGAAAACAAGGGTGTTGACTGTAGGGATGGATGTCAGAGCCAGATGAAAGTAAACATACCCAGTAAAGGTCTGAAAGGGGCAAGGGAAACATGTCCAGATGATGATGACTATAAGACTGAAGATAAAAAGGCAGAGAAAGGAGCAGAAAATATGATGGAGGAAACTACTGAATCAAGGGAAGAGAAGGATTCAAGCACACGAACTGATGCGGGTCGAAAAGATGGAAGAGTTTTGTCAGATGCAGATGCTGCTGTTTTGATACAAGCTGCATATCGCAGTTATCTAGTTAGAAAATGGGAACCGTTGAAGAAGTTGAAGCAGATAGATGAAGTCAGGAAGGAGGTGACTCGTGTTCAAGGCCGTGTTCAAGCTTTTGAGAGATCTCCCGAACTTCAAAATGATGACAAACAAAAAATTGCAATTGAAGAGACCATAATGAAACTCCTGCTGAAGTTGGATACTATACTGGGTTTGCATCCAAGTTTCAGGGAGATCAGAAAATCCTTGGCTAGGGAGCTCATAATCTTGCAAGAAAGGCTTGATTCTATAATGGCCAAGAAACCTCAGCAGCAGATGCCGGATGTTCAGGAACACGTTGAAATCACTCCAATGAACATGCAGAGTGAAGAACATGTGCAAAAGCAGCAAGAAGAAAAGGTTGCTGTACCAGAGGATTCAGCTGAAGGCACTAGGGATGATGTAAAAGGTCCTTGTGCTAATGATGGTGGAAGTGAATCTCAGTCACCAGTTGATCCTCCATCAAATGAGGGAGCAGAGTCTGTTGCACTTCCAAATGGCTCAGATAATGAGGACACCAGCCAAGTGGTTACATCTGATGCATTGAATTCTTCAAGTGATCTGTCTGAGAGTGACAAAATGGCTGTGGAATCCGAAGCTAAATCAGAAGTGAAAGACAATCCGATTGCGGAAGACATTCCCATTGAGGTTGATAAATTGGACAAGACTGTTTGGGAAGAATTGCCTGTGGGAGTTATTGATGAAGATATCAATGATGTTAGTATTGAGAAGGAAGAACATGATGATATTAGATCGGGAAGTCTCCCAGCCATGGTGAATGATTCGGCACAAGAAGGATTAAATTCAGAGAGCTATGCAATGATGGAACTGCCATTGGGATTACATGAGGAGCATGAAAGGGACAATGAAATGAATATTTCTAATGGAGAAACACGGTCTGAGAATGAGATATTTATTGAGGAGCTTCCTGTGGGACTGCACGATGAAGATACAACAATATCTAAAGATAAGAGGGATGGTCAAGCTAAGCCTAAAACATATAAAGAGGTTCGACTAGCTCAAGAAGGGGAATGCAATGCAGATGAGGAAACAAGTTCTTCCACAGATGACACTGCCAACGAAACTCAACTAGAGCAACAGCAGAAGCTGAAAGAGCAAGAAGAGGTGCATTATTCTAGGGAATCAGATGGCTGGGTAAAAATTGAGTACCCGGAAGAAGGTGAACTCAATGGTGATGCACCAATGGATATAAGAGTTGAGTGCAAGTCAGGTGAGGAAGCTGGAACTGATACTAAGTTGCTTCCTTTAACAACACAAGTCAGTGATAATGAACCAGAAAATGAAGATGTATTCTCAGAAGCAAATTATGTAAATAACAAATTAACCGAGCCAATGGAGTTTGTACCTTCCAATGACACACAGAAGGAGGAGACACCAGAGATGGTTGCTGAAGAGGCAATTATCCCTGATGATAAAGACACAGAAAATTTGGCCAAAGAGAAAACTGAAGTATCTGCAGAACCACCACCTGCATTGCAAGACCGAGGGTTAAACGGTGACTCGAAGTTATTAGAAGAGAATGAGAAGTTAAGGGAGATGATGAAGAAGTTGCTTGAAGCCGGGAATGAACAGTTAAGCGTGATATCAGATTTGACTGTCAGAGTGAAGGACTTGGAGAAGAAATTAGCCAGGAGAAGGAGTAAGAGAGTGAAGACAAAACAGTATAGACCCGCAGCTTCCAAAATGTCTACCCATGAAATGAAATCCTCCTAA
>Glyma07g06750.2 sequence type=predicted peptide gene model=Glyma07g06750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMPAYRSMDSYPCQRNQIPFPHYYHPGIEAIPPQMKLDPSKPPFSYDQHWPYAGNFGHPTSPHFCCGHNNFPCHYSYMPSYPHAPSPMYYSGTCPSYSEPYFVPYSPQPHYTMELPRYENDKCMPRELHCSGSANHPCNQKEGRSVKIEEHELDGGKKENDALVPIQLKNYPYPLVWIPQEYTSNKQLKNPSTMEVREQNKPSSLENSNVDAQPTQEPIVWNGWLPFNIKGARNMIHDGYGTRNQKQESGNNRGESENGKIDQKHQSEQKRSEFPFPIFWLPYYNKQEESGETKNQEKNISSPKIVEEVPHTFKFVPVKSHVDEGGRNRTGSNQADQSTNTNASSDAVEKVNNARSIPVKQIESHEGKNVSLDQMEENVTQKDSCTGDKKRQSTSSPKGSKLPPVCLRVDPLPRKKNGHGSSSSRSPSPPSSKGNSQATTGETFKTPVSGTHDKAQPNLNHQNAPNTSEKVKPKENTIPVSECMTNENKGVDCRDGCQSQMKVNIPSKGLKGARETCPDDDDYKTEDKKAEKGAENMMEETTESREEKDSSTRTDAGRKDGRVLSDADAAVLIQAAYRSYLVRKWEPLKKLKQIDEVRKEVTRVQGRVQAFERSPELQNDDKQKIAIEETIMKLLLKLDTILGLHPSFREIRKSLARELIILQERLDSIMAKKPQQQMPDVQEHVEITPMNMQSEEHVQKQQEEKVAVPEDSAEGTRDDVKGPCANDGGSESQSPVDPPSNEGAESVALPNGSDNEDTSQVVTSDALNSSSDLSESDKMAVESEAKSEVKDNPIAEDIPIEVDKLDKTVWEELPVGVIDEDINDVSIEKEEHDDIRSGSLPAMVNDSAQEGLNSESYAMMELPLGLHEEHERDNEMNISNGETRSENEIFIEELPVGLHDEDTTISKDKRDGQAKPKTYKEVRLAQEGECNADEETSSSTDDTANETQLEQQQKLKEQEEVHYSRESDGWVKIEYPEEGELNGDAPMDIRVECKSGEEAGTDTKLLPLTTQVSDNEPENEDVFSEANYVNNKLTEPMEFVPSNDTQKEETPEMVAEEAIIPDDKDTENLAKEKTEVSAEPPPALQDRGLNGDSKLLEENEKLREMMKKLLEAGNEQLSVISDLTVRVKDLEKKLARRRSKRVKTKQYRPAASKMSTHEMKSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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