Glyma07g06670 - SoyBase

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Report for Sequence Feature Glyma07g06670

Feature Type:	gene_model
Chromosome:	Gm07
Start:	5352153
stop:	5353867
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g06670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05400	AT	Annotation by Michelle Graham. TAIR10: copper ion binding \| chr4:2741256-2742008 FORWARD LENGTH=250	SoyBase	E_val: 2.00E-89	ISS
GO:0000085	GO-bp	Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0016571	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone methylation	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
UniRef100_I1KI06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI06_SOYBN	SoyBase	E_val: 3.00E-169	ISS
UniRef100_Q010P7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 10 n=1 Tax=Ostreococcus tauri RepID=Q010P7_OSTTA	SoyBase	E_val: 6.00E-06	ISS

Expression Patterns of Glyma07g06670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g06670 not represented in the dataset	Glyma07g06670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g06670

Paralog	Evidence	Comments
Glyma16g03240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g06670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g060800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g06670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g06670

Limit To All Plant Sequences

>Glyma07g06670.4   sequence type=transcript   gene model=Glyma07g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAATTTTAAAAATACTAATTATTTTAAAAAACAGTTTCTAAAACCAAAATTGAGGAGGAAATTAAACATATGCTTTTATTCTACCACCATGACTTGAAATTCTCGAATCTTTCCTGGGCCAGCCCATTGAGGTTTTTCTTTTTGGACCGGCCCATATCTCACTATCACTCCACTCTTCCTTTCTCTTGCCCTACCTCAGAAACCCACACTCCAAAACCACCACCTTCCCCCGAGAGCACAATCCGCCACCAACCCATCACCGGAACCATGCTCCGCCTCCTAAAGCCGCAACCTTTTCCCTCCGGGCACCACCTCATCCAACGCTGCGCCGTGAGCGGCACCGCAAAGGGCAAAGCGAAGATCAAAGCAGGCCAAGCGCTAAAACGCTCCCGCATCACCACGAAGAAACCCGGATCCGCGACCGCAGGCCCACCCATGTCGCGTGAGCGCCAAGAACGTGAGCGCCTCTACGAACAATGCCTTCAAGCCCCAACCCCTCTCCGCCACCTCACCCAAAAGGAGCGCGAACGCGAAGCGGAGCGCGAGAAATTGGGCCTCATCAGCAAGGATCGGCAGCGAGAAATCGACATGATGAAGCGAAAAGACGACAAATTTAAGGTTTCGGAGAAGCCCACGATTATTGGGACACCTGGGTTGGATTACGTGAGTTTAGGTTTGGTGGATGTGGACAAGTTGCCGAAGTATGATTTGACGGTGGAAGATGGGAGGAGGTTGGCGAAGGAGTATAGTAGGGTTTTGATGAGGAAGCATAGGGCGAGACAGGCTGCGGAGTCCAATCTTTTGAGGATGAAGAAGGAGGCGGCGAATAGGATCAGTGGAAAGGAGAAGATTAGGTGATTTTGTGTTTATGAATTTTGTTCACTGTTGAATGGAATGGATTGGAATAACAAATGTCATTGGTTTGTTGTTGGACTGATTGGAATGGGATGCAATGTGATCAAAATGAAATATATTTAGTTTTGATGCTTTTATTGTTGTTCTTGTTGTTTTGAGAGTTTGTGGAATGGAACTATGGGATGAAACTAACTTACTATTTGTTTAGAGGTTGGGGATGAAATGAAATGCTGTAAGCTGCTTCGCATTGTTTGAGATTGGATGAAATAAAATGCGATGTGATGATGGTTTTGTTTTCCTTTCCCTCATTTTGAGGTGTTGGATGAAATTAACTGATTATTTTCTAATTTCAGTCTCTGTTCAGTTATTTCCTAAACAATGGATTGGAATGAATTACCTAATAAATGGATGTTATACTCAAAGAAACCTGTGATAACTTCTTGTGTGGAGCACACTGGAGTGGAATTTCTCTTAGCTGTTTGCTTGTTTGGAGTGAAC

Coding sequences of Glyma07g06670

Limit To All Plant Sequences

>Glyma07g06670.3   sequence type=CDS   gene model=Glyma07g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTATTCTACCACCATGACTTGAAATTCTCGAATCTTTCCTGGGCCAGCCCATTGAGGTTTTTCTTTTTGGACCGGCCCATATCTCACTATCACTCCACTCTTCCTTTCTCTTGCCCTACCTCAGAAACCCACACTCCAAAACCACCACCTTCCCCCGAGAGCACAATCCGCCACCAACCCATCACCGGAACCATGCTCCGCCTCCTAAAGCCGCAACCTTTTCCCTCCGGGCACCACCTCATCCAACGCTGCGCCGTGAGCGGCACCGCAAAGGGCAAAGCGAAGATCAAAGCAGGCCAAGCGCTAAAACGCTCCCGCATCACCACGAAGAAACCCGGATCCGCGACCGCAGGCCCACCCATGTCGCGTGAGCGCCAAGAACGTGAGCGCCTCTACGAACAATGCCTTCAAGCCCCAACCCCTCTCCGCCACCTCACCCAAAAGGAGCGCGAACGCGAAGCGGAGCGCGAGAAATTGGGCCTCATCAGCAAGGATCGGCAGCGAGAAATCGACATGATGAAGCGAAAAGACGACAAATTTAAGGTTTCGGAGAAGCCCACGATTATTGGGACACCTGGGTTGGATTACGTGAGTTTAGGTTTGGTGGATGTGGACAAGTTGCCGAAGTATGATTTGACGGTGGAAGATGGGAGGAGGTTGGCGAAGGAGTATAGTAGGGTTTTGATGAGGAAGCATAGGGCGAGACAGGCTGCGGAGTCCAATCTTTTGAGGATGAAGAAGGAGGCTATTGAGGCTTTGCCTGAGGGGTTGAGAGAGGCTGCTTTGGTTCCTGATTTGGCTCCTTTTCCGGTTAACCGGTTTATGGCGACTCTTACGCCGCCTATTGAGGGTTACATTGAGCAGGTTAGGGAGGCGGCGAATAGGATCAGTGGAAAGGAGAAGATTAGGTGA

>Glyma07g06670.4   sequence type=CDS   gene model=Glyma07g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTATTCTACCACCATGACTTGAAATTCTCGAATCTTTCCTGGGCCAGCCCATTGAGGTTTTTCTTTTTGGACCGGCCCATATCTCACTATCACTCCACTCTTCCTTTCTCTTGCCCTACCTCAGAAACCCACACTCCAAAACCACCACCTTCCCCCGAGAGCACAATCCGCCACCAACCCATCACCGGAACCATGCTCCGCCTCCTAAAGCCGCAACCTTTTCCCTCCGGGCACCACCTCATCCAACGCTGCGCCGTGAGCGGCACCGCAAAGGGCAAAGCGAAGATCAAAGCAGGCCAAGCGCTAAAACGCTCCCGCATCACCACGAAGAAACCCGGATCCGCGACCGCAGGCCCACCCATGTCGCGTGAGCGCCAAGAACGTGAGCGCCTCTACGAACAATGCCTTCAAGCCCCAACCCCTCTCCGCCACCTCACCCAAAAGGAGCGCGAACGCGAAGCGGAGCGCGAGAAATTGGGCCTCATCAGCAAGGATCGGCAGCGAGAAATCGACATGATGAAGCGAAAAGACGACAAATTTAAGGTTTCGGAGAAGCCCACGATTATTGGGACACCTGGGTTGGATTACGTGAGTTTAGGTTTGGTGGATGTGGACAAGTTGCCGAAGTATGATTTGACGGTGGAAGATGGGAGGAGGTTGGCGAAGGAGTATAGTAGGGTTTTGATGAGGAAGCATAGGGCGAGACAGGCTGCGGAGTCCAATCTTTTGAGGATGAAGAAGGAGGCGGCGAATAGGATCAGTGGAAAGGAGAAGATTAGGTGA

Predicted protein sequences of Glyma07g06670

Limit To All Plant Sequences

>Glyma07g06670.3   sequence type=predicted peptide   gene model=Glyma07g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLFYHHDLKFSNLSWASPLRFFFLDRPISHYHSTLPFSCPTSETHTPKPPPSPESTIRHQPITGTMLRLLKPQPFPSGHHLIQRCAVSGTAKGKAKIKAGQALKRSRITTKKPGSATAGPPMSRERQERERLYEQCLQAPTPLRHLTQKEREREAEREKLGLISKDRQREIDMMKRKDDKFKVSEKPTIIGTPGLDYVSLGLVDVDKLPKYDLTVEDGRRLAKEYSRVLMRKHRARQAAESNLLRMKKEAIEALPEGLREAALVPDLAPFPVNRFMATLTPPIEGYIEQVREAANRISGKEKIR*

>Glyma07g06670.4   sequence type=predicted peptide   gene model=Glyma07g06670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLFYHHDLKFSNLSWASPLRFFFLDRPISHYHSTLPFSCPTSETHTPKPPPSPESTIRHQPITGTMLRLLKPQPFPSGHHLIQRCAVSGTAKGKAKIKAGQALKRSRITTKKPGSATAGPPMSRERQERERLYEQCLQAPTPLRHLTQKEREREAEREKLGLISKDRQREIDMMKRKDDKFKVSEKPTIIGTPGLDYVSLGLVDVDKLPKYDLTVEDGRRLAKEYSRVLMRKHRARQAAESNLLRMKKEAANRISGKEKIR*

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