Glyma07g06580 - SoyBase

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Report for Sequence Feature Glyma07g06580

Feature Type:	gene_model
Chromosome:	Gm07
Start:	5295955
stop:	5299208
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g06580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39740	AT	Annotation by Michelle Graham. TAIR10: ribosomal protein L5 B \| chr5:15903484-15905185 FORWARD LENGTH=301	SoyBase	E_val: 0	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009220	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
GO:0008097	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 5S rRNA binding	SoyBase	N/A	ISS
KOG0875	KOG	60S ribosomal protein L5	JGI		ISS
PTHR23410	Panther	RIBOSOMAL PROTEIN L5-RELATED	JGI		ISS
PF00861	PFAM	Ribosomal L18p/L5e family	JGI		ISS
UniRef100_I1KHZ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHZ4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I3NMI8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L5A n=1 Tax=Hevea brasiliensis RepID=I3NMI8_HEVBR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g06580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g06580 not represented in the dataset	Glyma07g06580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g06580

Paralog	Evidence	Comments
Glyma16g03170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g06580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g059900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g06580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g06580

Limit To All Plant Sequences

>Glyma07g06580.2   sequence type=transcript   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCCTTTCCGTCACTTTTGGGGAAGAGGTCGAGTTTCACAGCAGCAATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGGCATGCGAGAAGATTTTATTTTGTATCAGTCTTGTGTTGTTTAATGCAATATTTGGATTTTTAGCTAGTTGTTAGACAACCTTATTTTATATTTTCTGCAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTAAAAATGAGTTTTGACTTGAACTAGAATAATACTAGATTCTTGATTTCCAGCAGTG

>Glyma07g06580.3   sequence type=transcript   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTCTTGGGTTCATATTAAAGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGCACGTGTGGCGTCTCTCAACTCTGCTGCTGATAACGATGAAGATGATGAGTGAAAGTTCATTCAAGATTCCGTATCATCGTTGCACAACTAGAAACTATCTTATTTTGCGTCTAGGGAATCATTTTCTTGAAAATTTATTTACATGTACTGTTTATTTTCTAGGTCCGAAATTTTGGATACTATTTTTGAAGTTGGAGTAGCCGTTTTTTTTGTCAGTTTCGTGTTAGCCTGAATTGATGTTTTACCATACTTTGATGACATACGCTTTATTTCTAGCAGGAAGTGTTTTGGTTTTACGAACGGTTGCCCTTTTTTTTTATCGGCAATTAAAAAATATACAGCTATAATTTTTCAGGTTAAAT

>Glyma07g06580.4   sequence type=transcript   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGTAATGTTAATCAGTGTGATTTTTTTTAATGGTTGATCAAATTGAATAATCTGTGATTGTTTACAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGCACGTGTGGCGTCTCTCAACTCTGCTGCTGATAACGATGAAGATGATGAGTGAAAGTTCATTCAAGATTCCGTATCATCGTTGCACAACTAGAAACTATCTTATTTTGCGTCTAGGGAATCATTTTCTTGAAAATTTATTTACATGTACTGTTTATTTTCTAGGTCCGAAATTTTGGATACTATTTTTGAAGTTGGAGTAGCCGTTTTTTTTGTCAGTTTCGTGTTAGCCTGAATTGATGTTTTACCATACTTTGATGACATACGCTTTATTTCTAGCAGGAAGTGTTTTGGTTTTACGAACGGTTGCCCTTTTTTTTTATCGGCAATTAAAAAATATACAGCTATAATTTTTCAGGTTAAAT

Coding sequences of Glyma07g06580

Limit To All Plant Sequences

>Glyma07g06580.1   sequence type=CDS   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGCACGTGTGGCGTCTCTCAACTCTGCTGCTGATAACGATGAAGATGATGAGTGA

>Glyma07g06580.2   sequence type=CDS   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGTGCCAGGATTCGGTTGATTAATCAGGACAAGAACAAATATAACACTCCGAAATACCGATTTGTTGTTCGCTTTAGCAACAAGGACATTGTTGCACAAATAATATCTGCTAGCATTGCTGGCGATATTGTTCTTGCTGCAGCATATGCACATGAGCTGCCACAATATGGTCTTGAAGTAGGGCTTACAAATTATGCTGCAGCTTATTGCACTGGTCTCCTGTTGGCCCGAAGAGTCCTCAATACACTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGGCATGCGAGAAGATTTTATTTTGTATCAGTCTTGTGTTGTTTAATGCAATATTTGGATTTTTAGCTAGTTGTTAG

>Glyma07g06580.3   sequence type=CDS   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGAGGAGTATGAAGGAAATGTTGAGGCTACTGGAGAGGATTATTCCGTGGAACCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACTACAACCGGTAACCGTGTGTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGGTTGGATATTCCTCACAGTGATAAGAGGTTTGCTGGGTTTGATAAGGAAAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTTTTTGGTGGACATGTTGCTGCCTATATGAAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGCACGTGTGGCGTCTCTCAACTCTGCTGCTGATAACGATGAAGATGATGAGTGA

>Glyma07g06580.4   sequence type=CDS   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATCTTGGCTGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTGAATACATCAAGCGTGGGATAGAAGCTGATGGTATTGAGGCACTGTATAAGAAGGTTCATGCCGCCATTCGTGCTGATCCTACTCTTAAGAAATCTGATAAGCAGCCCCCGAAGGAGCACAAGAGGTACAACTTGAAGAAGCTGACTTATGAGGAGAGGAAGGCTAAGTTGATTGCACGTGTGGCGTCTCTCAACTCTGCTGCTGATAACGATGAAGATGATGAGTGA

Predicted protein sequences of Glyma07g06580

Limit To All Plant Sequences

>Glyma07g06580.1   sequence type=predicted peptide   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDIVLAAAYAHELPQYGLEVGLTNYAAAYCTGLLLARRVLNTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLKKSDKQPPKEHKRYNLKKLTYEERKAKLIARVASLNSAADNDEDDE*

>Glyma07g06580.2   sequence type=predicted peptide   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFSNKDIVAQIISASIAGDIVLAAAYAHELPQYGLEVGLTNYAAAYCTGLLLARRVLNTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKACEKILFCISLVLFNAIFGFLASC*

>Glyma07g06580.3   sequence type=predicted peptide   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVFGGHVAAYMKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLKKSDKQPPKEHKRYNLKKLTYEERKAKLIARVASLNSAADNDEDDE*

>Glyma07g06580.4   sequence type=predicted peptide   gene model=Glyma07g06580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKILAEDEPEKYQSHFSEYIKRGIEADGIEALYKKVHAAIRADPTLKKSDKQPPKEHKRYNLKKLTYEERKAKLIARVASLNSAADNDEDDE*

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