SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G20340 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0019752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carboxylic acid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004837 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tyrosine decarboxylase activity | SoyBase | N/A | ISS |
| GO:0016831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carboxy-lyase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG0628 | KOG | Aromatic-L-amino-acid/L-histidine decarboxylase | JGI | ISS | |
| PTHR11999 | Panther | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE | JGI | ISS | |
| PTHR11999:SF11 | Panther | GLUTAMATE DECARBOXYLASE | JGI | ISS | |
| PF00282 | PFAM | Pyridoxal-dependent decarboxylase conserved domain | JGI | ISS | |
| UniRef100_I1KHY8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHY8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9AXN7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine/dopa decarboxylase n=2 Tax=Thalictrum flavum RepID=Q9AXN7_THLFG | SoyBase | E_val: 0 | ISS |
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Glyma07g06500 not represented in the dataset |
Glyma07g06500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g059000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g06500.1 sequence type=CDS gene model=Glyma07g06500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGAAGAATACAATGAATAGGAACCCTCAAAGTGATGCACCAATCATAAAACCTCTAGATCCTGAAGAATTCAAGAGGCAAGGCTATATGATGGTTGATTTCCTTGCTGATTATATTAGGAATGTTAGCCATTATCCCGTTTTAAGTAAAGTAGAACCTGGTTATCTTAAACAAAGATTACCAACTTCTGCTCCATGTGGTCCAGAACCCATTGAATCCATACTTAAAGATGTGCAAGATCACATCATCCCTGGCCTCACACATTGGCAAAGTCCTAATTTTTATGGCTACTTCCCTTCAAGTGGTAGCATAGCAGGGTTTATGGGTGAGATGCTGAGCGCTGGACTCAATGTGGTTGGATTCAACTGGGTGTCATCTCCATCTGCCACTGAGCTTGAAAGCATAGTCATGGATTGGCTTGGACAAGTGCTGAACCTCCCCAAAAGCTTTCTTTTCTGTGGTGATCATGGTGGTGGTGTGGTGTTGGGGACTACTTGTGAGGCCATTTTGTGCACTTTGGTGGCTGCAAGGGAGAAAAAACTTTCCCAAGTCGGGAAGGAGAACATAGGAAAACTTGTGGTGTATGGCTCTGATCAAACACACAGTGCACTTCAGAAGGCAGCACAAATTGCAGGCATCCATCCAGCGAATTTCCGGGTCATCAAAACGAAGAGGTCGAATTCGTTTGCTCTGTCTCCTGATTCTCTTCTCTCCACCATTCTTTTGGATGTGGAGAGAGGGTTGATTCCTTGTTTCCTATGTGCCACTGTTGGCACTACTGCAATAGCAACCATTGATCCTATAGGGCCATTGTGTAATGTGGCCAAGGACTATGGAATTTGGGTCCATGTTGATGCTGCTTATGCAGGTTCAGCTTGCATTTGCCCTGAGTTTAGACATTGCATTGATGGGGTTGAAGAGGTTAACTCCTTTAGCCTCAATGCTCATAAATGGTTTTTGACCAATTTGACATGTTGTTGCCTTTGGGTGAAAGATCACATTGCCCTCACAAAATCCTTGACAGTAAATCCTCAATTCTTGAGGAACAAAGCTTCTGAGTCAAAGCGAGTGATTGACTACAAGGATTGGCAGATACCCTTGAGCAGGAAATTCAATGCCCTCAAACTATGGCTTGTTCTTAGAAGCTATGGTGTTGAGAACATTAGGAACTTCCTGAGAAATCATGTGCAAATGGCGAAAACCTTTGAAGGGCTAGTAAGGTTGGATAAGAGGTTTGAGATTGTTGTGCCACCAAAATTCTCTTTGGTTTGCTTTAGGATCGCCCCATCAGCAATAATTGCTAATGGACTTTCTAAAGGTGTTGAAGCTTGCTATAATGGGAAACTGGTGAATGATGAGTATATGGTGAATGAAGTCAATCGTAAATTGCTTGATTCTGTTAATAGTTCTGGTGATGCATTCATGACTCATGGTGAGGTCGAAGGAGCTTTTATGATTAGATGTGCTATTGGTGGAACCTTAACAGAGGAACACCATGTGATCATGGCATGGAAGTTGGTGCAGGAGCATGCCAATTCTCTGTTAGGACTGTGA
>Glyma07g06500.1 sequence type=predicted peptide gene model=Glyma07g06500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMKNTMNRNPQSDAPIIKPLDPEEFKRQGYMMVDFLADYIRNVSHYPVLSKVEPGYLKQRLPTSAPCGPEPIESILKDVQDHIIPGLTHWQSPNFYGYFPSSGSIAGFMGEMLSAGLNVVGFNWVSSPSATELESIVMDWLGQVLNLPKSFLFCGDHGGGVVLGTTCEAILCTLVAAREKKLSQVGKENIGKLVVYGSDQTHSALQKAAQIAGIHPANFRVIKTKRSNSFALSPDSLLSTILLDVERGLIPCFLCATVGTTAIATIDPIGPLCNVAKDYGIWVHVDAAYAGSACICPEFRHCIDGVEEVNSFSLNAHKWFLTNLTCCCLWVKDHIALTKSLTVNPQFLRNKASESKRVIDYKDWQIPLSRKFNALKLWLVLRSYGVENIRNFLRNHVQMAKTFEGLVRLDKRFEIVVPPKFSLVCFRIAPSAIIANGLSKGVEACYNGKLVNDEYMVNEVNRKLLDSVNSSGDAFMTHGEVEGAFMIRCAIGGTLTEEHHVIMAWKLVQEHANSLLGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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