Glyma07g06310 - SoyBase

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Report for Sequence Feature Glyma07g06310

Feature Type:	gene_model
Chromosome:	Gm07
Start:	5037034
stop:	5041916
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g06310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01370	AT	Annotation by Michelle Graham. TAIR10: Histone superfamily protein \| chr1:143773-145400 FORWARD LENGTH=178	SoyBase	E_val: 6.00E-48	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006270	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication initiation	SoyBase	N/A	ISS
GO:0006275	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication	SoyBase	N/A	ISS
GO:0006334	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleosome assembly	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0016458	GO-bp	Annotation by Michelle Graham. GO Biological Process: gene silencing	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0048451	GO-bp	Annotation by Michelle Graham. GO Biological Process: petal formation	SoyBase	N/A	ISS
GO:0048453	GO-bp	Annotation by Michelle Graham. GO Biological Process: sepal formation	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0051307	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome separation	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0000775	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromosome, centromeric region	SoyBase	N/A	ISS
GO:0000785	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromatin	SoyBase	N/A	ISS
GO:0000786	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleosome	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1745	KOG	Histones H3 and H4	JGI		ISS
PTHR11426	Panther	HISTONE H3	JGI		ISS
PTHR11426:SF4	Panther	CENTROMERIC HISTONE H3 HTR12 (HISTONE H3 LIKE PROTEIN)	JGI		ISS
PF00125	PFAM	Core histone H2A/H2B/H3/H4	JGI		ISS
UniRef100_G9MA90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Centromere specific histone H3 variant n=1 Tax=Astragalus sinicus RepID=G9MA90_ASTSI	SoyBase	E_val: 7.00E-62	ISS
UniRef100_I1KHX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KHX1_SOYBN	SoyBase	E_val: 8.00E-147	ISS

Expression Patterns of Glyma07g06310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g06310 not represented in the dataset	Glyma07g06310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g06310

Paralog	Evidence	Comments
Glyma16g02951	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g06310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g057300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g06310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g06310

Limit To All Plant Sequences

>Glyma07g06310.2   sequence type=transcript   gene model=Glyma07g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAACCGCTTCATTTTGAAAATTCACAAACCAATAGTGAAAAGAGACAGAGAGGGAAAAAGAAGAAGAAAAGAAAAAGAAAATTGCAAAAAGCGAAACCGAAAACCAAATCCGAAGAGTGAAGGTTCGTTGAATCCCATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAATCCGCTAAAAAGCAAGCGCCACGCGCATCCACTTCCACGCAGCCGCCACCACAATCCCAATCGCCTGCAACTAGAGAGAGGAGGAGAGCTCAACAAGTGGAGCCGCAGCAGGAGCCTGAGGCTCAGGGAAGGAAGAAGAGGCGCAATAGGTCGGGAACTGTGGCGCTTCGTGAGATTCGGCATTTTCAGAGGAGTTGTGAGCTTCTCATCCCGGCTGCTCCCTTTATCAGATGTGTCAAACAGATTACAAATCAATTCTCTACGGAGGTGTCTCGTTGGACACCTGAAGCTGTGGTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTATTTGAAGATGGAATGCTCTGTGCAATTCATGCAAGGCGTATTACTCTTAGTAAGTTGATATAATTTTTTAAATTCTATACTTGATTTACCTTTCATCGATCATCAAATCATCCATGAATTTATCTTCCATAAATTCTATGCTGCTTTTATTTGTGTATGAATGTATTTTTTTCTTTGTTACAGAAAAATTGATTATTTTATTATGTT

Coding sequences of Glyma07g06310

Limit To All Plant Sequences

>Glyma07g06310.1   sequence type=CDS   gene model=Glyma07g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAACCGCTTCATTTTGAAAATTCACAAACCAATAGTGAAAAGAGACAGAGAGGGAAAAAGAAGAAGAAAAGAAAAAGAAAATTGCAAAAAGCGAAACCGAAAACCAAATCCGAAGAGTGAAGGTTCGTTGAATCCCATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAATCCGCTAAAAAGCAAGCGCCACGCGCATCCACTTCCACGCAGCCGCCACCACAATCCCAATCGCCTGCAACTAGAGAGAGGAGGAGAGCTCAACAAGTGGAGCCGCAGCAGGAGCCTGAGGCTCAGGGAAGGAAGAAGAGGCGCAATAGGTCGGGAACTGTGGCGCTTCGTGAGATTCGGCATTTTCAGAGGAGTTGTGAGCTTCTCATCCCGGCTGCTCCCTTTATCAGATGTGTCAAACAGATTACAAATCAATTCTCTACGGAGGTGTCTCGTTGGACACCTGAAGCTGTGGTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTATTTGAAGATGGAATGCTCTGTGCAATTCATGCAAGGCGTATTACTCTTATGAAAAAGGACATTGAGTTGGCCCGGAGGCTTGGAGGAATAGGAAGGCCTTGGTGA

>Glyma07g06310.2   sequence type=CDS   gene model=Glyma07g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCAAACCGCTTCATTTTGAAAATTCACAAACCAATAGTGAAAAGAGACAGAGAGGGAAAAAGAAGAAGAAAAGAAAAAGAAAATTGCAAAAAGCGAAACCGAAAACCAAATCCGAAGAGTGAAGGTTCGTTGAATCCCATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAATCCGCTAAAAAGCAAGCGCCACGCGCATCCACTTCCACGCAGCCGCCACCACAATCCCAATCGCCTGCAACTAGAGAGAGGAGGAGAGCTCAACAAGTGGAGCCGCAGCAGGAGCCTGAGGCTCAGGGAAGGAAGAAGAGGCGCAATAGGTCGGGAACTGTGGCGCTTCGTGAGATTCGGCATTTTCAGAGGAGTTGTGAGCTTCTCATCCCGGCTGCTCCCTTTATCAGATGTGTCAAACAGATTACAAATCAATTCTCTACGGAGGTGTCTCGTTGGACACCTGAAGCTGTGGTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTATTTGAAGATGGAATGCTCTGTGCAATTCATGCAAGGCGTATTACTCTTAGTAAGTTGATATAA

Predicted protein sequences of Glyma07g06310

Limit To All Plant Sequences

>Glyma07g06310.1   sequence type=predicted peptide   gene model=Glyma07g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANRFILKIHKPIVKRDREGKRRRKEKENCKKRNRKPNPKSEGSLNPMARVKHTPASRKSAKKQAPRASTSTQPPPQSQSPATRERRRAQQVEPQQEPEAQGRKKRRNRSGTVALREIRHFQRSCELLIPAAPFIRCVKQITNQFSTEVSRWTPEAVVALQEAAEEYLVHLFEDGMLCAIHARRITLMKKDIELARRLGGIGRPW*

>Glyma07g06310.2   sequence type=predicted peptide   gene model=Glyma07g06310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEANRFILKIHKPIVKRDREGKRRRKEKENCKKRNRKPNPKSEGSLNPMARVKHTPASRKSAKKQAPRASTSTQPPPQSQSPATRERRRAQQVEPQQEPEAQGRKKRRNRSGTVALREIRHFQRSCELLIPAAPFIRCVKQITNQFSTEVSRWTPEAVVALQEAAEEYLVHLFEDGMLCAIHARRITLSKLI*

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