Glyma07g05960 - SoyBase

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Report for Sequence Feature Glyma07g05960

Feature Type:	gene_model
Chromosome:	Gm07
Start:	4673252
stop:	4674950
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49330	AT	Annotation by Michelle Graham. TAIR10: myb domain protein 111 \| chr5:19999147-20001293 REVERSE LENGTH=342	SoyBase	E_val: 1.00E-65	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0051555	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG0048	KOG	Transcription factor, Myb superfamily	JGI		ISS
PTHR10641	Panther	MYB-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_I1KHT7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KHT7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0PJJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor MYB92 n=2 Tax=Glycine max RepID=Q0PJJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g05960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05960

Paralog	Evidence	Comments
Glyma16g02570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g05960

Limit To All Plant Sequences

>Glyma07g05960.1   sequence type=CDS   gene model=Glyma07g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGGGCTCCTTGTTGTTCCAAAGTGGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACCAAGTATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCAGGGCTTCTTAGATGTGGAAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGGAACATAACACCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGAAACAGATGGTCCCTCATAGCAGGAAGGTTACCAGGGAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTAAGCAAAAAGCTGAAAATTCAAGGAACAGAAGACACAGACACACACAACATGTTAGAGAATCCTCAAGAAGAGCCAGCCAGTGATGGTGGCAACAACAACAAAAAGAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAAGGCAAAGACAATGCTGAGCCACCAAAGACCCAAGTTTACCTACCAAAACCAATTAGAGTGAAGGCTATGTATTTACAGAGAACGGATAGTAACACCTTCACCTTTGATTCCAATTCCAATTCTGCTAGTGGATCAACAAGCCAAGAGAAGGATGAAAGCCCCGTGACAAAAGAATCAAACGTGGTTAGTGAAGTTGGTAATGTGGGAGAAGAAAGTGATGGTTTTGGCTTCTTCAGTGAGGACCATGACTTAGTCAACGCCTCAGATATTGAATGCCAATCTTATTTTCCCACATATCATGGCACCCTACAGCAACTGTATGAAGAATATTTTCAGCTCTTGAACATGGATCAAGGCCAATTCGAACGGAATTCCTTTGCAGAATCTTTATTAGAGTGA

Predicted protein sequences of Glyma07g05960

Limit To All Plant Sequences

>Glyma07g05960.1   sequence type=predicted peptide   gene model=Glyma07g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLKIQGTEDTDTHNMLENPQEEPASDGGNNNKKKKKNGGKKKNKGKDNAEPPKTQVYLPKPIRVKAMYLQRTDSNTFTFDSNSNSASGSTSQEKDESPVTKESNVVSEVGNVGEESDGFGFFSEDHDLVNASDIECQSYFPTYHGTLQQLYEEYFQLLNMDQGQFERNSFAESLLE*

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