SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01200 | AT | Annotation by Michelle Graham. TAIR10: RAB GTPase homolog A3 | chr1:86715-88145 REVERSE LENGTH=237 | SoyBase | E_val: 3.00E-115 | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0009504 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell plate | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG0087 | KOG | GTPase Rab11/YPT3, small G protein superfamily | JGI | ISS | |
| PTHR24073 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24073:SF213 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00071 | PFAM | Ras family | JGI | ISS | |
| UniRef100_I1KHS6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHS6_SOYBN | SoyBase | E_val: 2.00E-179 | ISS |
| UniRef100_Q9ST41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PRA2 n=1 Tax=Pisum sativum RepID=Q9ST41_PEA | SoyBase | E_val: 2.00E-137 | ISS |
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Glyma07g05860 not represented in the dataset |
Glyma07g05860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g02460 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g052800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05860.1 sequence type=CDS gene model=Glyma07g05860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCAAGAAATGAATGGGGTTGAGGCTGAGAAGAGGCAAGAGAATGGACATGAGAAAGTGGATTATGATGTGCAGGAGAAAATAGACTATGTGTTTAAGGTGGTGGTGATAGGGGACTCAGCAGTTGGCAAGACTCAAATACTCTCAAGGTTTGCAAAGAATGAGTTCTGCTTTGACTCAAAGTCCACCATTGGGGTTGAATTCCAGACTAGGACTGTCACTATTAATGGCAAAGTCATCAAAGCTCAGATCTGGGACACTGCTGGCCAAGAAAGGTATAGGGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTGGTCTACGACATAACGAAGAGGCAATCGTTTGATCATGTTGCAAGATGGGTTGAGGAGCTGCGTGCACACGCAGATAGCTCCATTGTGATCATGTTGGTGGGGAACAAAGCTGACCTTGTGGACCAGAGAATGGTGCCAACTGAGGATGCAGTGGAGTTTGCTGAGGACCAAGGCCTCTTCTTCTCTGAGACTTCAGCACTCAGTGGTGACAATGTGGAGAGTGCATTTCTCAAATTGCTAGAAGAGATCAATAGGGTAGTGTCCAAAAAGGCTTTGGAATGTGGTTATGGGAAGGAGAATGGTGACAACAATGTTGTTGCCTCACTCAATGGAACAAAGGTTGATATAATCTTGGGTCCTGAATTGGAAATTAGTGAGATGAAGAAATTGTCTTCGTGCTCTTGTTAA
>Glyma07g05860.1 sequence type=predicted peptide gene model=Glyma07g05860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNQEMNGVEAEKRQENGHEKVDYDVQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVARWVEELRAHADSSIVIMLVGNKADLVDQRMVPTEDAVEFAEDQGLFFSETSALSGDNVESAFLKLLEEINRVVSKKALECGYGKENGDNNVVASLNGTKVDIILGPELEISEMKKLSSCSC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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