Glyma07g05720 - SoyBase

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Report for Sequence Feature Glyma07g05720

Feature Type:	gene_model
Chromosome:	Gm07
Start:	4377364
stop:	4381339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00850	AT	Annotation by Michelle Graham. TAIR10: GRF1-interacting factor 3 \| chr4:357675-358928 FORWARD LENGTH=223	SoyBase	E_val: 1.00E-63	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription coactivator activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3227	KOG	Calcium-responsive transcription coactivator	JGI		ISS
PTHR23107	Panther	SYNOVIAL SARCOMA ASSOCIATED SS18 PROTEIN	JGI		ISS
PF05030	PFAM	SSXT protein (N-terminal region)	JGI		ISS
UniRef100_B9SVF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Synovial sarcoma associated ss18 protein, putative n=1 Tax=Ricinus communis RepID=B9SVF1_RICCO	SoyBase	E_val: 4.00E-85	ISS
UniRef100_I1KHR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHR3_SOYBN	SoyBase	E_val: 3.00E-147	ISS

Expression Patterns of Glyma07g05720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05720 not represented in the dataset	Glyma07g05720 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05720

Paralog	Evidence	Comments
Glyma16g02310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g051300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05720

Limit To All Plant Sequences

>Glyma07g05720.5   sequence type=transcript   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGGCTCAAAACGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTCAAACTCAAACAGGGGGCAATGCGAAGACCTATAAATAGCGAACACTTGAGCCTTGTCGATTGTTAGTTTGGATTTGGAACTACCAAAAGCCGAACGTCGCACAAAAACCCCAAACCTAGCAACCATTGAGTTTTGTTTGCTTTGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACAAAGACAAACCCCAGTTCTCAACTGTGTTTTACCTCTCTCTCACCTACTTTCAGACCATACCCAGGTCCTCTTTCTCTCTTTTTATGCCAAAATTTTTGTCTTTTTCCCTTTTTATTGAGGGTTTGTGTAACATTTTTCCATCTGGGGTTTGGGAACTGTTTATGATTGTGGTGATTTTGGGGGAATTAGGGTTTTTGCTTTTTCTTTTTAAATTAGTTTCAGTGACATTAACGAGGCTGAGAAGATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAACCTTGTCATGATGCAGTACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATGTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTCTTAAAAGGGTAGGACTAGTGTGATCTGATGACCTTTGATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGCTTAGGTAGTTGTGTTGTTAGAATTTTGGCACGAAGCAAGTTTGCATCAACTGAAACGGCTGGTGCCACAACATACTGTACTTGTCACTGGAAGGTGTAAGCATGTGGTATTTGTGATCACCTAAATTGCTTCTGGTTTTTAACAATTTTTCTTTGCAGTTTGTTGTGGTCATATAAACAAAAATGTTTGCTTTTGGTGCAATTCTACTGGATTCTAGGCGTCAATTGAAACATGAAATGCCGTGGATGGATTCACGGTCTGAATTTAGTTTAGGGTCTAATCTTCATTAGGCCCGGAACTTGCAATTCAGGAACAAGTACTTTGAGATGCTTCTAAAGGATATTTGCCTTTATTACAGTTATTATTTTGA

>Glyma07g05720.6   sequence type=transcript   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGGCTCAAAACGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTCAAACTCAAACAGGGGGCAATGCGAAGACCTATAAATAGCGAACACTTGAGCCTTGTCGATTGTTAGTTTGGATTTGGAACTACCAAAAGCCGAACGTCGCACAAAAACCCCAAACCTAGCAACCATTGAGTTTTGTTTGCTTTGGTTGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACAAAGACAAACCCCAGTTCTCAACTGTGTTTTACCTCTCTCTCACCTACTTTCAGACCATACCCAGGTCCTCTTTCTCTCTTTTTATGCCAAAATTTTTGTCTTTTTCCCTTTTTATTGAGGGTTTGTGTAACATTTTTCCATCTGGGGTTTGGGAACTGTTTATGATTGTGGTGATTTTGGGGGAATTAGGGTTTTTGCTTTTTCTTTTTAAATTAGTTTCAGTGACATTAACGAGGCTGAGAAGATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATGTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTCTTAAAAGGGTAGGACTAGTGTGATCTGATGACCTTTGATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGCTTAGGTAGTTGTGTTGTTAGAATTTTGGCACGAAGCAAGTTTGCATCAACTGAAACGGCTGGTGCCACAACATACTGTACTTGTCACTGGAAGGTGTAAGCATGTGGTATTTGTGATCACCTAAATTGCTTCTGGTTTTTAACAATTTTTCTTTGCAGTTTGTTGTGGTCATATAAACAAAAATGTTTGCTTTTGGTGCAATTCTACTGGATTCTAGGCGTCAATTGAAACATGAAATGCCGTGGATGGATTCACGGTCTGAATTTAGTTTAGGGTCTAATCTTCATTAGGCCCGGAACTTGCAATTCAGGAACAAGTACTTTGAGATGCTTCTAAAGGATATTTGCCTTTATTACAGTTATTATTTTGA

>Glyma07g05720.7   sequence type=transcript   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCGGGCTCAAAACGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGTCAAACTCAAACAGGGGGCAATGCGAAGACCTATAAATAGCGAACACTTGAGCCTTGTCGATTGTTAGTTTGGATTTGGAACTACCAAAAGCCGAACGTCGCACAAAAACCCCAAACCTAGCAACCATTGAGTTTTGTTTGCTTTGAAACATCGTGTGCACAGTACCCCAGAAGATCGAACAAGGATCTCCACAAAGACAAACCCCAGTTCTCAACTGTGTTTTACCTCTCTCTCACCTACTTTCAGACCATACCCAGTTTCAGTGACATTAACGAGGCTGAGAAGATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGACATGTTTTTATGTGCTTTTCATGAGATACATATGACTGTTGATAGTAGGTTTTCTTAAAAGGGTAGGACTAGTGTGATCTGATGACCTTTGATAGGTCGACCAAAGGACAAAAGGGCTTCTCTTGTTTGATAGCTTAGGTAGTTGTGTTGTTAGAATTTTGGCACGAAGCAAGTTTGCATCAACTGAAACGGCTGGTGCCACAACATACTGTACTTGTCACTGGAAGGTGTAAGCATGTGGTATTTGTGATCACCTAAATTGCTTCTGGTTTTTAACAATTTTTCTTTGCAGTTTGTTGTGGTCATATAAACAAAAATGTTTGCTTTTGGTGCAATTCTACTGGATTCTAGGCGTCAATTGAAACATGAAATGCCGTGGATGGATTCACGGTCTGAATTTAGTTTAGGGTCTAATCTTCATTAGGCCCGGAACTTGCAATTCAGGAACAAGTACTTTGAGATGCTTCTAAAGGATATTTGCCTTTATTACAGTTATTATTTTGA

Coding sequences of Glyma07g05720

Limit To All Plant Sequences

>Glyma07g05720.1   sequence type=CDS   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma07g05720.5   sequence type=CDS   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAGTACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma07g05720.6   sequence type=CDS   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

>Glyma07g05720.7   sequence type=CDS   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCAGACACCGCCAATGATTCCTATGATGCCTTCTTTCCCACCTACGAACATAACCACCGAGCAGATTCAAAAATACCTTGATGAGAACAAGAAGCTGATTCTGGCAATATTGGACAATCAAAATCTTGGAAAACTTGCAGAATGTGCCCAGTACCAAGCTCAGCTTCAAAAGAATTTGATGTATTTAGCTGCAATTGCTGATGCCCAGCCTCAAACCCCGGCCATGCCTCCGCAGATGGCACCGCACCCTGCCATGCAACCAGGATTCTATATGCAACATCCTCAGGCTGCTGCAGCAGCAATGGCTCAGCAGCAGCAAGGAATGTTCCCCCAGAAAATGCCATTGCAATTTGGCAATCCACATCAAATGCAGGAACAACAACAGCAGCTACACCAGCAGGCCATCCAAGGTCAAATGGGACTTAGACCTGGAGATATAAATAATGGCATGCATCCAATGCACAGTGAGGCTGCTCTTGGAGGTGGAAACAGCGGTGGTCCACCTTCGGCTACTGGTCCAAACGATGCACGTGGTGGAAGCAAGCAAGATGCCTCTGAGGCTGGAACAGCTGGTGGAGACGGCCAAGGCAGCTCCGCGGCTGCTCATAACAGTGGAGATGGTGAAGAGGCAAAGTGA

Predicted protein sequences of Glyma07g05720

Limit To All Plant Sequences

>Glyma07g05720.1   sequence type=predicted peptide   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGDINNGMHPMHSEAALGGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma07g05720.5   sequence type=predicted peptide   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGDINNGMHPMHSEAALGGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma07g05720.6   sequence type=predicted peptide   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGDINNGMHPMHSEAALGGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

>Glyma07g05720.7   sequence type=predicted peptide   gene model=Glyma07g05720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTPPMIPMMPSFPPTNITTEQIQKYLDENKKLILAILDNQNLGKLAECAQYQAQLQKNLMYLAAIADAQPQTPAMPPQMAPHPAMQPGFYMQHPQAAAAAMAQQQQGMFPQKMPLQFGNPHQMQEQQQQLHQQAIQGQMGLRPGDINNGMHPMHSEAALGGGNSGGPPSATGPNDARGGSKQDASEAGTAGGDGQGSSAAAHNSGDGEEAK*

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