SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01140 | AT | Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 9 | chr1:64398-67512 REVERSE LENGTH=447 | SoyBase | E_val: 0 | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mannitol stimulus | SoyBase | N/A | ISS |
| GO:0043266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of potassium ion transport | SoyBase | N/A | ISS |
| GO:0051365 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to potassium ion starvation | SoyBase | N/A | ISS |
| GO:0055075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: potassium ion homeostasis | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24345 | Panther | SERINE/THREONINE-PROTEIN KINASE PLK | JGI | ISS | |
| PTHR24345:SF45 | Panther | SERINE/THREONINE-PROTEIN KINASE PLK1 | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF03822 | PFAM | NAF domain | JGI | ISS | |
| UniRef100_A0MNJ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CBL-interacting protein kinase 12 n=1 Tax=Populus trichocarpa RepID=A0MNJ9_POPTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KHQ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHQ8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g05700 not represented in the dataset |
Glyma07g05700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g02290 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g051000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05700.2 sequence type=transcript gene model=Glyma07g05700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGCAATTTCCAGGAAGGTGCCTGAGGAAAGCAAGCAAAACCATTAAAGTTATGGAACACATGGTTGGTTTAGGATTTTTGTGTTTTTGTCTTCCTTTGATCCTCAAACAACCGAGGGATCATATCCCCACACGATTCAAACACGCACTCTCTATCCATTCATCTCTCTCCCTCCTTCCCTACTTTCGTGATTCTTCTTCATCTCAAACACACAATATTTTTGAACCAATAAAGTAGTAAGAGCCTTATTTGAACATCTATCGTATCCAAAAACACAAGTTTGGAAAAACGTTAATTGTGGGAAACAAAGGAACAGAACAATGAGCGGGAAGCCAGTGAGACCTCGTACCCGTGTGGGAAAGTACGAGCTGGGAAAAACCATTGGTGAGGGAAGCTTTGCTAAGGTCAAGTTTGCTAAGAACGTTGAGAATGGTAACCATGTTGCCATCAAAATCCTTGATCGTAACCACGTCCTCCGCCATAAGATGATGGAACAGCTGAAGAAAGAAATTTCAGCGATGAAGATGATCAATCATCCAAACGTTGTCAAAATTTACGAGGTGATGGCAAGCAAAACAAAGATCTATATTGTGCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATAGCTAAATATGGGAAACTTAAAGAGGATGAAGCAAGAAGTTATTTCCATCAATTAATCAATGCCGTTGATTACTGCCACAGCAGAGGCGTGTACCACAGAGATCTGAAGCCAGAGAATCTTCTTCTGGACTCAAATGCTATTCTGAAAGTTACAGATTTTGGATTGAGTACGTATGCGCAACAGGAGGATGAACTTCTCCGCACTGCTTGTGGAACTCCAAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCCTGTGGAGTCATTCTCTTTGTGCTTATGGCTGGGTACTTGCCCTTTGATGAGCCAAATCATGCGACACTGTACCAAAAAATTGGCAGGGCCCAATTCACATGTCCATCATGGTTTTCTCCCGAGGCAAAGAAACTATTGAAGCGTATTCTTGATCCAAACCCTCTAACAAGGATAAAAATTCCTGAACTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAGCCAACAACTTTTGTAGAGGAAGAGGATGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGACAGAGAGAAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCTCATATCTAGGTCACAAAGTTTCAATCTTGAAAATTTGTTTGAGAAGCAGACAGGGATTGTTAAGAGAGAAACACATTTTACCTCACAGCGCCCTGCAAATGAAATCATGTCAAAAATTGAGGAAGCTGCGAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTATAAGATGAAGCTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTTGCTACAGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAACTGCGAAAGACCGGGGGTGACACACTAGAGTTTCACAAGTTCTACAAAAGCTTTTCATCATCATCAGGGTTGCAAGACATAGTGTGGCATTCTGAAGCAAAACAATGAAGAATCAAGATGTGCATGCATGGAAGATATCATGCACGTATTTTTGTTGGAAGATATCAGGAACTTTTTTTGTTCATGGAAGATATCGTGCTTAGCTAAAACTGGAGCATGTTGAGTTGGGAGAGTCTGCTCTAATGTTTGATAGGGTAAAAACAAAACCTAGATCGTACAAAACTTAGAGTGTATATTTCCTTGAACTTTTATTCATAATATTTCATGACCTTAATTAATTCAATGGCTCATAATAACTTTGAAAAAATGGTTGTTGCCCAAACAGAAATGAGTGCAATCGAGTTTTTTTTTTTTTTTTTTGTTCTT
>Glyma07g05700.1 sequence type=CDS gene model=Glyma07g05700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGGGAAGCCAGTGAGACCTCGTACCCGTGTGGGAAAGTACGAGCTGGGAAAAACCATTGGTGAGGGAAGCTTTGCTAAGGTCAAGTTTGCTAAGAACGTTGAGAATGGTAACCATGTTGCCATCAAAATCCTTGATCGTAACCACGTCCTCCGCCATAAGATGATGGAACAGCTGAAGAAAGAAATTTCAGCGATGAAGATGATCAATCATCCAAACGTTGTCAAAATTTACGAGGTGATGGCAAGCAAAACAAAGATCTATATTGTGCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATAGCTAAATATGGGAAACTTAAAGAGGATGAAGCAAGAAGTTATTTCCATCAATTAATCAATGCCGTTGATTACTGCCACAGCAGAGGCGTGTACCACAGAGATCTGAAGCCAGAGAATCTTCTTCTGGACTCAAATGCTATTCTGAAAGTTACAGATTTTGGATTGAGTACGTATGCGCAACAGGAGGATGAACTTCTCCGCACTGCTTGTGGAACTCCAAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCCTGTGGAGTCATTCTCTTTGTGCTTATGGCTGGGTACTTGCCCTTTGATGAGCCAAATCATGCGACACTGTACCAAAAAATTGGCAGGGCCCAATTCACATGTCCATCATGGTTTTCTCCCGAGGCAAAGAAACTATTGAAGCGTATTCTTGATCCAAACCCTCTAACAAGGATAAAAATTCCTGAACTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAGCCAACAACTTTTGTAGAGGAAGAGGATGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGACAGAGAGAAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCTCATATCTAGGTCACAAAGTTTCAATCTTGAAAATTTGTTTGAGAAGCAGACACAGGGGATTGTTAAGAGAGAAACACATTTTACCTCACAGCGCCCTGCAAATGAAATCATGTCAAAAATTGAGGAAGCTGCGAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTATAAGATGAAGCTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTTGCTACAGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAACTGCGAAAGACCGGGGGTGACACACTAGAGTTTCACAAGTTCTACAAAAGCTTTTCATCATCATCAGGGTTGCAAGACATAGTGTGGCATTCTGAAGCAAAACAATGA >Glyma07g05700.2 sequence type=CDS gene model=Glyma07g05700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGGGAAGCCAGTGAGACCTCGTACCCGTGTGGGAAAGTACGAGCTGGGAAAAACCATTGGTGAGGGAAGCTTTGCTAAGGTCAAGTTTGCTAAGAACGTTGAGAATGGTAACCATGTTGCCATCAAAATCCTTGATCGTAACCACGTCCTCCGCCATAAGATGATGGAACAGCTGAAGAAAGAAATTTCAGCGATGAAGATGATCAATCATCCAAACGTTGTCAAAATTTACGAGGTGATGGCAAGCAAAACAAAGATCTATATTGTGCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATAGCTAAATATGGGAAACTTAAAGAGGATGAAGCAAGAAGTTATTTCCATCAATTAATCAATGCCGTTGATTACTGCCACAGCAGAGGCGTGTACCACAGAGATCTGAAGCCAGAGAATCTTCTTCTGGACTCAAATGCTATTCTGAAAGTTACAGATTTTGGATTGAGTACGTATGCGCAACAGGAGGATGAACTTCTCCGCACTGCTTGTGGAACTCCAAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCCTGTGGAGTCATTCTCTTTGTGCTTATGGCTGGGTACTTGCCCTTTGATGAGCCAAATCATGCGACACTGTACCAAAAAATTGGCAGGGCCCAATTCACATGTCCATCATGGTTTTCTCCCGAGGCAAAGAAACTATTGAAGCGTATTCTTGATCCAAACCCTCTAACAAGGATAAAAATTCCTGAACTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAGCCAACAACTTTTGTAGAGGAAGAGGATGTCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAATCTTGTGACAGAGAGAAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCTCATATCTAGGTCACAAAGTTTCAATCTTGAAAATTTGTTTGAGAAGCAGACAGGGATTGTTAAGAGAGAAACACATTTTACCTCACAGCGCCCTGCAAATGAAATCATGTCAAAAATTGAGGAAGCTGCGAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTATAAGATGAAGCTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTTGCTACAGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAACTGCGAAAGACCGGGGGTGACACACTAGAGTTTCACAAGTTCTACAAAAGCTTTTCATCATCATCAGGGTTGCAAGACATAGTGTGGCATTCTGAAGCAAAACAATGA
>Glyma07g05700.1 sequence type=predicted peptide gene model=Glyma07g05700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGKPVRPRTRVGKYELGKTIGEGSFAKVKFAKNVENGNHVAIKILDRNHVLRHKMMEQLKKEISAMKMINHPNVVKIYEVMASKTKIYIVLELVNGGELFDKIAKYGKLKEDEARSYFHQLINAVDYCHSRGVYHRDLKPENLLLDSNAILKVTDFGLSTYAQQEDELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNHATLYQKIGRAQFTCPSWFSPEAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPTTFVEEEDVNVDDVAAAFNDSKENLVTERKEKPVSMNAFELISRSQSFNLENLFEKQTQGIVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSSSGLQDIVWHSEAKQ* >Glyma07g05700.2 sequence type=predicted peptide gene model=Glyma07g05700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGKPVRPRTRVGKYELGKTIGEGSFAKVKFAKNVENGNHVAIKILDRNHVLRHKMMEQLKKEISAMKMINHPNVVKIYEVMASKTKIYIVLELVNGGELFDKIAKYGKLKEDEARSYFHQLINAVDYCHSRGVYHRDLKPENLLLDSNAILKVTDFGLSTYAQQEDELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNHATLYQKIGRAQFTCPSWFSPEAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPTTFVEEEDVNVDDVAAAFNDSKENLVTERKEKPVSMNAFELISRSQSFNLENLFEKQTGIVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKFYKSFSSSSGLQDIVWHSEAKQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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