Glyma07g05680 - SoyBase

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Report for Sequence Feature Glyma07g05680

Feature Type:	gene_model
Chromosome:	Gm07
Start:	4335391
stop:	4339373
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G00820	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 17 \| chr4:349300-351307 FORWARD LENGTH=534	SoyBase	E_val: 4.00E-175	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF84	Panther	MYOSIN VIII	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_B9SVG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVG1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233868A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233868A related cluster n=1 Tax=unknown RepID=UPI000233868A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g05680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05680

Paralog	Evidence	Comments
Glyma16g02240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g050800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05680

Limit To All Plant Sequences

>Glyma07g05680.2   sequence type=transcript   gene model=Glyma07g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAATGAACAGTTAGTGAATGCTGGTGTATCTAAGAGTGCGTTACGTTAAATTTTGCCAAAGGATTTTACATGAGGAGTGACTCAGATATTTCACTCACGACAGAGCCAGGAGGAGGAGGAGGAGGAGGACAAGTTCACTGTAGCATTGCTCAACTGTTTTGTTGTGTGTACTTGTGTTCAAATAACAACAAGAAAGACTGAACCAGAGCTCCATAACATAAGTTTCTTCTTGTTTTTCCTTGTGTCTATTTCCCCGAGACAAAGGAGGTTGAACTTGAAAGTTGAAACTCTCTTCTGTTCTGTTCTGTCTTTTAACACAAAAATTATGGTTATAATTTTTTCTGGTTCTTTCTGAGGGGCTGTTTTTAGCGGTTGAGGTTGAAGCTGTAAATGCCGCTGAGATAGATTTACATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAGAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATGAAGGAGGGAACAACAACAACAACACTCAACAAAAGTTGAAGCATGATGTGGCAGCAAGTGGTGGTGGTTCAAGGACAGACCAGGATCAGAAGCATGCAGTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGTCCAAACCTGCTAGCCATGCCAGGGAGCATTATGCTGCTGTTGTGATCCAAACTGCTTTTAGAGGGTATCTTGCTAGAAGAGCACTTCGTGCACTAAAGGGTTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTTCTTGACCAACGCATAAGGTCTTCACTTGAAGGTAGTAGAAAATCCACTTTCAGTGACACTGCTAGTGTTTGGGACTCGCGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTACAGATGACTGGGATGAAAGGCATCACACAGTTGAAGAAGTGAAGGCCATGTTGATGCAGAGGAAGGAAGCTGCTGCAATGAAGAGGGACAAGACCTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCACATTAAGACTGTGGAAATTGACACATCTCAGCCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATACAACCCAAACCATCACCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCTCCCTTCACCAGTCCCCTGCCACCCCTTCTCCTGCCAAATCGAGGCCCATCCAAGTCCGGTCCGCGAGTCCACGTTGCATTAGAGACGACAGAAGCTACCACACCTCCCAAACACCAAGCTTGAGGTCTAATTACCACTACGCAGGAAATTTGTACCAAAATGGGAGGGTTGTTGGAACTGGAACTAGTAATGGTGGTGCTACTGCTACATTGCCTAATTACATGGCGGCAACCGAGTCTGCAAAGGCTCGAATTCGGTCACAAAGCGCGCCAAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCCAAGAAAAGGCTTTCTTTTCCAGCTCCTGACCCTTATGGTGTGGGAGTGAGTTATGGAAACTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGGGGTTAGAACAACAATCAAATTACTCTTCTTGCTGCACTGAGAGTATTGGTGGGGGTCAGGTTTCTCCTTCTTCAACAGGTGACCTTAGGAGGTGGTTGAGATGATTTGTTGCACACTTTAATGAGAAGAAACATGACCGGACCCATTAGGCCATGGCCATAATTCACTTCATATTTGATTTTTATTTGGGCTTTTTGTGATGTTAGAGTTAATTTTAGTTTAACCCTTTCTCACCCTCCCAAAAGAAAGTTATTTAATTACCCCCGGGCGACCTGAATCTGATGTTAGGAACCAGAGAAGCAAGCAAGTACTTTTTCTTGCTAGGAAACTCAGAACAATTTAATGTGTTCGTTTATCATTCGTTTTTCATACTTTTCTTAAGATGCCAAGATAAAAAGTGAGCCCTATGTGGTGGCCTACCTCACTTGGGATGTTGTGTTGATGTTGAAAGAATTGCCAAGACCATCTGAAATAGCTTTTAATGGACTGTCCTGTCACAATAACATAGACTTGTAAGAGCATCTCTAGCAGTTTATAATGG

Coding sequences of Glyma07g05680

Limit To All Plant Sequences

>Glyma07g05680.1   sequence type=CDS   gene model=Glyma07g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAGAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATGAAGGAGGGAACAACAACAACAACACTCAACAAAAGTTGAAGCATGATGTGGCAGCAAGTGGTGGTGGTTCAAGGACAGACCAGGATCAGAAGCATGCAGTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGTCCAAACCTGCTAGCCATGCCAGGGAGCATTATGCTGCTGTTGTGATCCAAACTGCTTTTAGAGGGTATCTTGCTAGAAGAGCACTTCGTGCACTAAAGGGTTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTTCTTGACCAACGCATAAGGTCTTCACTTGAAGGTAGTAGAAAATCCACTTTCAGTGACACTGCTAGTGTTTGGGACTCGCGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTACAGATGACTGGGATGAAAGGCATCACACAGTTGAAGAAGTGAAGGCCATGTTGATGCAGAGGAAGGAAGCTGCTGCAATGAAGAGGGACAAGACCTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCACATTAAGACTGTGGAAATTGACACATCTCAGCCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATACAACCCAAACCATCACCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCTCCCTTCACCAGTCCCCTGCCACCCCTTCTCCTGCCAAATCGAGGCCCATCCAAGTCCGGTCCGCGAGTCCACGTTGCATTAGAGACGACAGAAGCTACCACACCTCCCAAACACCAAGCTTGAGGTCTAATTACCACTACGCAGGAAATTTGTACCAAAATGGGAGGGTTGTTGGAACTGGAACTAGTAATGGTGGTGCTACTGCTACATTGCCTAATTACATGGCGGCAACCGAGTCTGCAAAGGCTCGAATTCGGTCACAAAGCGCGCCAAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCCAAGAAAAGGCTTTCTTTTCCAGCTCCTGACCCTTATGGTGTGGGAGTGAGTTATGGAAACTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGGGGTTAGAACAACAATCAAATTACTCTTCTTGCTGCACTGAGAGTATTGGTGGGGGTCAGGTTTCTCCTTCTTCAACAGGTGACCTTAGGAGGTGGTTGAGATGA

>Glyma07g05680.2   sequence type=CDS   gene model=Glyma07g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACAGTGACAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAGAGGGAAAAGAGAAGATGGATTTTCAGGAAGACTCACATGAGTCATGAAGGAGGGAACAACAACAACAACACTCAACAAAAGTTGAAGCATGATGTGGCAGCAAGTGGTGGTGGTTCAAGGACAGACCAGGATCAGAAGCATGCAGTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGTCCAAACCTGCTAGCCATGCCAGGGAGCATTATGCTGCTGTTGTGATCCAAACTGCTTTTAGAGGGTATCTTGCTAGAAGAGCACTTCGTGCACTAAAGGGTTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACCCTTAGGTGCATGCAGGCTTTGGTTAGAGTTCAAGCAAGGGTTCTTGACCAACGCATAAGGTCTTCACTTGAAGGTAGTAGAAAATCCACTTTCAGTGACACTGCTAGTGTTTGGGACTCGCGGTATCTTCAGGACATTTCAGATAGGAAATCAATATCAAGAGAGGGAAGCAGCATTACAGATGACTGGGATGAAAGGCATCACACAGTTGAAGAAGTGAAGGCCATGTTGATGCAGAGGAAGGAAGCTGCTGCAATGAAGAGGGACAAGACCTTATCCCAAGCCTTTTCCCAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGAAATGAAGATGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCACATTAAGACTGTGGAAATTGACACATCTCAGCCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAATACAACCCAAACCATCACCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCACCAAAATGGATCCTCCCTTCACCAGTCCCCTGCCACCCCTTCTCCTGCCAAATCGAGGCCCATCCAAGTCCGGTCCGCGAGTCCACGTTGCATTAGAGACGACAGAAGCTACCACACCTCCCAAACACCAAGCTTGAGGTCTAATTACCACTACGCAGGAAATTTGTACCAAAATGGGAGGGTTGTTGGAACTGGAACTAGTAATGGTGGTGCTACTGCTACATTGCCTAATTACATGGCGGCAACCGAGTCTGCAAAGGCTCGAATTCGGTCACAAAGCGCGCCAAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCCAAGAAAAGGCTTTCTTTTCCAGCTCCTGACCCTTATGGTGTGGGAGTGAGTTATGGAAACTATGGACATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGGGGTTAGAACAACAATCAAATTACTCTTCTTGCTGCACTGAGAGTATTGGTGGGGGTCAGGTTTCTCCTTCTTCAACAGGTGACCTTAGGAGGTGGTTGAGATGA

Predicted protein sequences of Glyma07g05680

Limit To All Plant Sequences

>Glyma07g05680.1   sequence type=predicted peptide   gene model=Glyma07g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGGNNNNNTQQKLKHDVAASGGGSRTDQDQKHAVAVAVATAEAAMATAQAAVEVARLSKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLEGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSITDDWDERHHTVEEVKAMLMQRKEAAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDHIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSSLHQSPATPSPAKSRPIQVRSASPRCIRDDRSYHTSQTPSLRSNYHYAGNLYQNGRVVGTGTSNGGATATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYGVGVSYGNYGHSLRSPSFKSVSGSHFGGLEQQSNYSSCCTESIGGGQVSPSSTGDLRRWLR*

>Glyma07g05680.2   sequence type=predicted peptide   gene model=Glyma07g05680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGGNNNNNTQQKLKHDVAASGGGSRTDQDQKHAVAVAVATAEAAMATAQAAVEVARLSKPASHAREHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLEGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSITDDWDERHHTVEEVKAMLMQRKEAAAMKRDKTLSQAFSQQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDHIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSHQNGSSLHQSPATPSPAKSRPIQVRSASPRCIRDDRSYHTSQTPSLRSNYHYAGNLYQNGRVVGTGTSNGGATATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYGVGVSYGNYGHSLRSPSFKSVSGSHFGGLEQQSNYSSCCTESIGGGQVSPSSTGDLRRWLR*

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