Glyma07g05591 - SoyBase

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Report for Sequence Feature Glyma07g05591

Feature Type:	gene_model
Chromosome:	Gm07
Start:	4213949
stop:	4216494
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05591

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46780	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr2:19229516-19231043 FORWARD LENGTH=336	SoyBase	E_val: 4.00E-67	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0149	KOG	Predicted RNA-binding protein SEB4 (RRM superfamily)	JGI		ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24011:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9RNJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding region-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RNJ8_RICCO	SoyBase	E_val: 1.00E-114	ISS
UniRef100_D7U825	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=D7U825_VITVI	SoyBase	E_val: 3.00E-115	ISS

Expression Patterns of Glyma07g05591

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05591 not represented in the dataset	Glyma07g05591 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05591

Paralog	Evidence	Comments
Glyma16g02121	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05591 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g050000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05591

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05591

Limit To All Plant Sequences

>Glyma07g05591.2   sequence type=transcript   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTCCTTCATTCTCTTCCTTTCCACCCTTAAAAGTAATGATATTATATACCATGAACACAACCACAAGTGCATGAATGTTTTCAACTTTTCATTGATGATTTGATCATGTAATCTTCCAAAAGAACATTCTTTTTTCTCACATAATTTTCTTTTGTAATCCAATTTTGCTTTTGGTTGTTTGAAATTTTGAGATTGTATGTATCTCTATTCATTTCTAAAACAAATAATATCTCCACAAAGCAATTTCAGATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAAAGCTAAATATGTTGAAAGGTGATGAAAAAGGGTAAGAACCAAGAGGGGATGACATTGATTATTTAAGAAGCATATTAAGTAGTGATTCCTAAAAGAGGCTGAGAAGTACTCCAATAACTCAACACGGAACCCTTCATTCAAGGAATGGGTACATGATATACAATACATAAAGTTCATGTCACTCATCAACCAAAACCAATCCTTAATTCATGCTCTAAATATTGCAGCCTTATACTCTTCCTTATAGGCTAATTTTACTAACCCTGGATTGACTAGTTATTTT

>Glyma07g05591.3   sequence type=transcript   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATAAGCCCCACAAATATCCCAAACAGAGCAAGCAACATTAAGGTGCACATAAGGAAGGTTGAATACGACCAAGCAGAAGTTCTATGCTCCTAAAATGACACATTATTATGTATGAAATAGCACAGAGAAAGGGGTGATATAGTAAAAAAGCAATTTCAGATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAAAGCTAAATATGTTGAAAGGTGATGAAAAAGGGTAAGAACCAAGAGGGGATGACATTGATTATTTAAGAAGCATATTAAGTAGTGATTCCTAAAAGAGGCTGAGAAGTACTCCAATAACTCAACACGGAACCCTTCATTCAAGGAATGGGTACATGATATACAATACATAAAGTTCATGTCACTCATCAACCAAAACCAATCCTTAATTCATGCTCTAAATATTGCAGCCTTATACTCTTCCTTATAGGCTAATTTTACTAACCCTGGATTGACTAGTTATTTT

>Glyma07g05591.4   sequence type=transcript   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATAAGCCCCACAAATATCCCAAACAGAGCAAGCAACATTAAGGTGCACATAAGGAAGGTTGAATACGACCAAGCAGAAGTTCTATGCTCCTAAAATGACACATTATTATGTATGAAATAGCACAGAGAAAGGGGTGATATAGTAAAAAAGATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAAAGCTAAATATGTTGAAAGGTGATGAAAAAGGGTAAGAACCAAGAGGGGATGACATTGATTATTTAAGAAGCATATTAAGTAGTGATTCCTAAAAGAGGCTGAGAAGTACTCCAATAACTCAACACGGAACCCTTCATTCAAGGAATGGGTACATGATATACAATACATAAAGTTCATGTCACTCATCAACCAAAACCAATCCTTAATTCATGCTCTAAATATTGCAGCCTTATACTCTTCCTTATAGGCTAATTTTACTAACCCTGGATTGACTAGTTATTTT

Coding sequences of Glyma07g05591

Limit To All Plant Sequences

>Glyma07g05591.1   sequence type=CDS   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAA

>Glyma07g05591.2   sequence type=CDS   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAA

>Glyma07g05591.3   sequence type=CDS   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAA

>Glyma07g05591.4   sequence type=CDS   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGTGATAACATCAATTCAAGGCAATATAATATTGATATAAATTCTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAGTTTGGAGAGATCTTAGAGGCTGTTGTGATCACAGACAAGAACACTCTGAAATCCAAGGGTTATGGTTTTGTCACATTCAAGGATCCAGAGGCAGCAATGAAAGCATGTCAGAACCCCTCTCCAATAATTGATGGAAGGAGGGCAAACTGTAATATTGCATCTATTGGTGCAAACAAGAATCGGACACGGGCTCCACAACATCAACATGGACGGTCTAGAGCAGCACCTGGTGTGTTGGCCTCACCTGCTTATCATGGCACTTCCTCTACATTTGTCCATCAAAACAGTGGGCAATACACATTTCCCAATTCAAGTTTTGGATACACTGGATATTCACAAGGCACAATATACCCCCTGAGCTGCTATGGGGTATTTGGAGGTCAACAAATCTCAACTTACTACCCGTCCAATGGGGCATCTGGCCAAGTGGGATTGGTTCATAACATTTACCCTTTCAGTGCCCAATATTCATACAATAGCCATTCTCATGGTTTTGGAGTACAATATCCACAAATGATGCAGTTTCCAATTCTCCCTAGGCACTATGGTTCAGCTGGTATCCTTGCACTTCCTTCTTCAATGCCAATGCCAAATATTAGTGCAGTTACAACAACAGCAACTACAACAACAGCAGAGGCAATAAGAACAAGTGTAGGAACTTCACAAACCGCTGGAACAACTTCTGAACAAAATTCTTCTGCTGAATCTCTACATAGACAAACCCATGATGCCTTGTAA

Predicted protein sequences of Glyma07g05591

Limit To All Plant Sequences

>Glyma07g05591.1   sequence type=predicted peptide   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGDNINSRQYNIDINSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTLKSKGYGFVTFKDPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRAAPGVLASPAYHGTSSTFVHQNSGQYTFPNSSFGYTGYSQGTIYPLSCYGVFGGQQISTYYPSNGASGQVGLVHNIYPFSAQYSYNSHSHGFGVQYPQMMQFPILPRHYGSAGILALPSSMPMPNISAAVTTTATTTTAEAIRTSVGTSQTAGTTSEQNSSAESLHRQTHDAL*

>Glyma07g05591.2   sequence type=predicted peptide   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGDNINSRQYNIDINSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTLKSKGYGFVTFKDPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRAAPGVLASPAYHGTSSTFVHQNSGQYTFPNSSFGYTGYSQGTIYPLSCYGVFGGQQISTYYPSNGASGQVGLVHNIYPFSAQYSYNSHSHGFGVQYPQMMQFPILPRHYGSAGILALPSSMPMPNISAVTTTATTTTAEAIRTSVGTSQTAGTTSEQNSSAESLHRQTHDAL*

>Glyma07g05591.3   sequence type=predicted peptide   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGDNINSRQYNIDINSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTLKSKGYGFVTFKDPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRAAPGVLASPAYHGTSSTFVHQNSGQYTFPNSSFGYTGYSQGTIYPLSCYGVFGGQQISTYYPSNGASGQVGLVHNIYPFSAQYSYNSHSHGFGVQYPQMMQFPILPRHYGSAGILALPSSMPMPNISAVTTTATTTTAEAIRTSVGTSQTAGTTSEQNSSAESLHRQTHDAL*

>Glyma07g05591.4   sequence type=predicted peptide   gene model=Glyma07g05591   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGDNINSRQYNIDINSTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTLKSKGYGFVTFKDPEAAMKACQNPSPIIDGRRANCNIASIGANKNRTRAPQHQHGRSRAAPGVLASPAYHGTSSTFVHQNSGQYTFPNSSFGYTGYSQGTIYPLSCYGVFGGQQISTYYPSNGASGQVGLVHNIYPFSAQYSYNSHSHGFGVQYPQMMQFPILPRHYGSAGILALPSSMPMPNISAVTTTATTTTAEAIRTSVGTSQTAGTTSEQNSSAESLHRQTHDAL*

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