SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G00800 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr4:337114-345581 REVERSE LENGTH=1913 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR12616 | Panther | VACUOLAR PROTEIN SORTING VPS41 | JGI | ISS | |
| PF00637 | PFAM | Region in Clathrin and VPS | JGI | ISS | |
| UniRef100_F4JHM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transducin family protein / WD-40 repeat family protein n=1 Tax=Arabidopsis thaliana RepID=F4JHM9_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338683 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338683 related cluster n=1 Tax=unknown RepID=UPI0002338683 | SoyBase | E_val: 0 | ISS |
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Glyma07g05560 not represented in the dataset |
Glyma07g05560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g02100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g049700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05560.1 sequence type=CDS gene model=Glyma07g05560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTCGACCTCCGTTCATTCCTTCACTCTCCGACCTCCACCTCCTCCTCCGACGCCGACGCCGACGACGGCGCTCCTCCCCGCACCATCGATGATATTCTCAACGACTGTGACACTTCCTCTTCCTCACCCTCCCCTCCTTCTTCTCCCTCTCACTCACTCTCCAACAATTCCCGCCCTCAAAACCCCACACTCCAACAAAAACCACTCCAACCCGCACCCGATTCGTTTTCTCGGGTCAAACCCGCTGAATTCTCCGACCGCGCACGCGTTTCGCGCCCGTTCTCCTCTCTCCTGCACGGCGTCAGGTCCAATGCCAAGCCCGGCGCGGCGCTCGCCGCGGCGGCGGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATCTCCCGTAGGAAATCCGCGGCTGCGAATATTGTCGAATCGAGTTCGATCGCTGCCACCGGCGATGTTTCTTCCAAAGGCGAGTTGGGCGAGCCTAGCGAGAAATTCGATCCAGTGCCGCCGAAAATCGAGACTCCGTCTAGTGAAAGTGCTTCTGCTATTGGTGAACGTTTTGAGATTGATGCGGAAATTGTCACTGATTTGAAGGCTGGCAGTGATGACATTCAGGTGCACACTGATAATAATAATAATAATGCTGATGATGATGATGATAATGATAATGATTCTTCTATCGTGAGTGAGGAAAAGAGGGATTTAGATGAGGTTGACCGTGATCATGAGAAGGATATGAATTCTGCACCGTTTGATGACGATGATGATCGTGGGTTTGATGGAAAAGGCGATGATGAGAGAATCACTGCTACGGGTGTAGCTGTGGAAACAGAAGAAGAAGTAGTAGTGAGTAATGATATTAGTTCTATGGAAGATGTTAAGAATGAGGTGAGTGTTGGTGGTGATGATGAGGGTAGTTCCTTAGGTGATGTTGCTGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAACAGAAGGGCTGCTAAGAGAGCTGAGAAGAAACGGGAGTCTTCGATGAAGCCACTTGAATTGGCCGAGGAACTGGAGAAGAAGCGTGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGGCTTGAGGGCGTTCGGAGAGGGTCCACGACATTGGGATACTTTGATGTTGATGCTGGTAATGCGTTCACAAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCCACCCGAGCCTTGGCAGTTCATGCTAATTACATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTGTTTCCCAGTAAATATTCCATTCACCATGCTGACAACTCTGATGGAAAGATGATGATGCTTGCTATACAAGGTGATCGGTTGCATGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGCCATCTTACCCTGTGGGATGTACAGAAAGGGGTAGTGGCAAAAGTTATTAGTGGTGAACATACAGCACCAGTAGTACATACATTGTTTCTAGGACAGGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTCCACATCATCTCAGTGGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACGGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCGCCTTATACCCAGGGAAACACCTCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACGTTGCAAGTTTATGCTCAGCTCTCTAGGCCAGATGGAGTTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACACAAATATGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAGGTTTTGGTTGCAAAGTTGGTCAAATCAGAATTAAAAGTATATGGAAGATGGTCTCTTGATGGTGCGGCTTTAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTTCTGTAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATATATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTGGGCCCAACACATCTTCTTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGGAATGACTCTTTATGATGGCCATGCTCATGGAGTTGTTGACCTTCCTAGAACCTTGGATGCTGTACATGAAGCCATAATGCCCTTCTTGATGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAATCAAATTGGAAAACTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAGATAAAGGAGCAATATGCCCGTGTTGGTGGAGTTGCCGTTGAATTTTGCTGTCATATCAAACGGACAGACATTCTTTTTGATGAAATTTTCAACAAGTTCGTGGATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCCTATATTTTGAAGGACATGCTTGGATCTCTACCTCCCGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGTTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGCGCTTGGGTATCGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGAAGTATTCCTCCCTCACGTTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAGGACACCTGTACTCCGAAATCACAGACAGTTTCAGACTTTGTGTACAGACGACCACACCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTAGATGTCCTCAGATGTGCTTTCATGGAAGATGGAATTTCAAATGCCAGCTCATCTTCACCAGATTCAGCCAATAAACCTATAACGGAAGCAAAAAAGGAAAATGATAATGTTAACAAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCCCACAGATAAAACCTCTAGTAGTGGTGATGATGGGTTGATAAAAGATTGTCCTTCCAAGGACATAGGTTATTTGTTTGAGTTCATTGCATATTATGTTGCTCTCCAAAGGGCTAAGATTTCAAAGGGTGTGCTTTGTCAAATATTGGAATATTTGACATCAGATAGTCAGTTTTCAACTAATGTTTCTGTTCAAGGATCATCTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTTTGGAAATACTTCCTGAATCAGACTGGGATGCATCATTTGTGCTAGATCTATGCGAGAGAGCAAAATATCATCAGGTTTGCGGATTGATTCATAGTATCAGACATGAATATGTGGCGGCATTGGATAGTTATATGAAAGATGCAGATGAGCCTGTTCATGCTTTCTCCTTTATTAACAGAGCATTCTCACAGTTGACTGACAATGATCATGCAGCTTTTCGGTCAGCAGTCATATTTCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGCGCATTCCATATGGTTATCAGTCATTTTAGCAATGAAAGTTCCCGTATCATAACTGATCTTCACTGTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCATTTATTTGGCACCCTAGACCTGTCTAATTTGAGAAAAGATGGTACTATGAATCCCCTTAATGGAAGGCAGGTTAAGGATCACCCACAAGGAGTCAGAGATTACTTAGAGAATATATCTAATTTCCCCAAGTACATGCGTGAAAATCCTATTCGAGTTCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCAAGTATGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCATCTGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTATATGATAAATTTGTTGAGCTTGATACCGCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGTTGGTTCTTCACATATGGAAGTATTCAACAGTGTTTTGAAAACAAAGGAGGTAAGTGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGATCCATTGATGGATTCAAATGTTGAAGAGAGAGCATATGAAAGTAAGAGTTATTTTGGAATGCTAGCTGGATCAGCAGATTCACAACAGGACAAAGACACCCATAAAAGCAGTTGGAAAATTTCAAAGTCCTGGACTGGTCATATCTTGAAAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATCGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTCCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCATTAATAGAGGATGATTCTTTTTATACTATGAGTTTACTCAAAAAAGGGGCCTCCCATGGATACGCTCCCAGGAGTCTCGTGTGCTGTGTTTGTAATTGCCCTCTTACAAAGAACTCTGTTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGGATCGAGCAAAACATCTTCATCTGGATGCCCTGTATGCCCTGTATGCATGCCCAACCAGAAATCCCAGCAGTCTAGAAACAAATCAATCATTGCAGCAAATGGCTTGGTCAATAAATTCTCATCAAGGCCTCAATACCCCCATGGAAGTTCCATTCATCCTCATGACAGTGATTTATCAGATAATATGTATGGACAACAACAGATATCACGGTTCGAGATCTTGAGCAGCTTGCAGAAGAATCGGAGATTTATGCAAATAGAAAACTTGCCTCCATTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGGCAAACTTTCTGACTGGCGAAAGTAGCAATAGTTCCAGTGCTATTGAGAAACAAAGTAGAAGCAAGCAAAATCGGGAGCTGAGAGTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAAGCATATTTGGCAAGGAGAAGACCAATAAGCGGTGA
>Glyma07g05560.1 sequence type=predicted peptide gene model=Glyma07g05560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELDLRSFLHSPTSTSSSDADADDGAPPRTIDDILNDCDTSSSSPSPPSSPSHSLSNNSRPQNPTLQQKPLQPAPDSFSRVKPAEFSDRARVSRPFSSLLHGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAANIVESSSIAATGDVSSKGELGEPSEKFDPVPPKIETPSSESASAIGERFEIDAEIVTDLKAGSDDIQVHTDNNNNNADDDDDNDNDSSIVSEEKRDLDEVDRDHEKDMNSAPFDDDDDRGFDGKGDDERITATGVAVETEEEVVVSNDISSMEDVKNEVSVGGDDEGSSLGDVAELVEERLEELENRRAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDAGNAFTRAISSQTFRREQGSTRALAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMMMLAIQGDRLHAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPYTQGNTSAPASSISSMMGGVVGGDAGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQICSSTENMSAEAVERVSLLAIAWERKVLVAKLVKSELKVYGRWSLDGAALGLAWLDDQMLVVLTSSGQLYLFSKDGTVIHQTSFSVDGIGGDDLVSYHTHFINIFGNPEKAYHNSVAVRGASIYILGPTHLLVSRLLPWKERISVLRKAGDWMGALNMGMTLYDGHAHGVVDLPRTLDAVHEAIMPFLMELLTSYVDEVFSYISVAFCNQIGKLDQSNDSNSRSNSVHSEIKEQYARVGGVAVEFCCHIKRTDILFDEIFNKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGSIPPSRLPSLRRELVEFLLKDTCTPKSQTVSDFVYRRPHLNLYLLLKLDTEATLDVLRCAFMEDGISNASSSSPDSANKPITEAKKENDNVNKTQNALVQNTVDALIQIIDMNIVPTDKTSSSGDDGLIKDCPSKDIGYLFEFIAYYVALQRAKISKGVLCQILEYLTSDSQFSTNVSVQGSSPKNREKQVLALLEILPESDWDASFVLDLCERAKYHQVCGLIHSIRHEYVAALDSYMKDADEPVHAFSFINRAFSQLTDNDHAAFRSAVIFRIPELVELSREGAFHMVISHFSNESSRIITDLHCHPRSLFLYLKTLIELHLFGTLDLSNLRKDGTMNPLNGRQVKDHPQGVRDYLENISNFPKYMRENPIRVPDDLIELYLELLCKYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDASAFLLERVGDVGSALSLTLSDLYDKFVELDTAVEAVVLNHRRVGSSHMEVFNSVLKTKEVSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSNVEERAYESKSYFGMLAGSADSQQDKDTHKSSWKISKSWTGHILKKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCVCNCPLTKNSVSSGIRIFNCGHAIHLQCEVSEIEGSSKTSSSGCPVCPVCMPNQKSQQSRNKSIIAANGLVNKFSSRPQYPHGSSIHPHDSDLSDNMYGQQQISRFEILSSLQKNRRFMQIENLPPLKLAPPAVYHEKVSKVANFLTGESSNSSSAIEKQSRSKQNRELRVKGSSIRFPLKSSIFGKEKTNKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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