Glyma07g05510 - SoyBase

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Report for Sequence Feature Glyma07g05510

Feature Type:	gene_model
Chromosome:	Gm07
Start:	4151847
stop:	4156548
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58810	AT	Annotation by Michelle Graham. TAIR10: metal tolerance protein A2 \| chr3:21750551-21751849 FORWARD LENGTH=393	SoyBase	E_val: 1.00E-165	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0006829	GO-bp	Annotation by Michelle Graham. GO Biological Process: zinc ion transport	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010299	GO-bp	Annotation by Michelle Graham. GO Biological Process: detoxification of cobalt ion	SoyBase	N/A	ISS
GO:0010312	GO-bp	Annotation by Michelle Graham. GO Biological Process: detoxification of zinc ion	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009705	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005385	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0008324	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015562	GO-mf	Annotation by Michelle Graham. GO Molecular Function: efflux transmembrane transporter activity	SoyBase	N/A	ISS
KOG1482	KOG	Zn2+ transporter	JGI		ISS
PTHR11562	Panther	CATION EFFLUX PROTEIN/ ZINC TRANSPORTER	JGI		ISS
PF01545	PFAM	Cation efflux family	JGI		ISS
UniRef100_C9WEK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc ion transmembrane transporter n=1 Tax=Medicago sativa RepID=C9WEK2_MEDSA	SoyBase	E_val: 0	ISS
UniRef100_I1KHN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHN9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g05510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05510 not represented in the dataset	Glyma07g05510 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05510

Paralog	Evidence	Comments
Glyma16g02030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g049200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05510

Limit To All Plant Sequences

>Glyma07g05510.2   sequence type=transcript   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAATTATTAAAATATCACTGATATCTGCTTGAAGTAAAGCTCATCTCATTTGAAGTTTTTTTTCTTTCTGAGTTTCTTTGTTTTGGAAAACATTAATGGAAGCACAAAGCTCTCAGCATACACAAGTTATTGAGATCAGTGGTGATTTTCCTGATGGTGGAAGGAAGATTTGTGGGGAAGCACCGTGTGGGTTTGCAGATGCTGGATCCATCTCTAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTTTTCATGGCAGTGGTCCTTTGTGTTATTTTCATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATATTGACTGATGCAGCTCATTTGCTTTCAGATGTTGCATCCTTTGCCATCTCCTTATTTTCATTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAAATGATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTTGTGGTTAATATCATCATGGCATTGTTATTGGGTCATGATCATGGCCACAGACATGCTGGTCACAGTCACGGACACGGACATGATGGTCATGGCCACAGTCATGGATTTACAATGTCTACCCATTGTGATGCAAAGCATACCAAAGATCAGCACCATCACACACACCATCATGATGAAAACCATCCAAAAGATGCTCACCATCATACTGATGAAGATCACTTGCACCATCATGCTCACAAAGAGGTTACTGAACTGCTTCTTGGTGAGTCAAAAGGTGGAACTAAGAAGAAGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTCCATGTTCTTGGGGACTCTATCCAAAGTATTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAACCCTCGTTGGCAAATTGTTGATTTAATCTGCACTCTAATCTTTTCAGTAATTGTTATGGGGACAACCATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACACCTCGTGAGATAGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCCGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTTGCATGTCATGTTAAGATCAGACGTGAAGCAGATGCAGACTTGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAGCGTTAGAATTTTTCTTCTTTAATTGACTATTTTCTGGTAGTAAAGATTAGAGGGGAAGGATTTAGTTGGACTTGAGGAATTGTTCTGGAACTCAAATTTGTCGATGTTCTTATATTCTTCTATCTAGAAGTTTAAGAGTGCAGATATGAGCATTGAATATTTACATGCCAAATTTTTATTATCTGTGATATTATTGTCAAATACTTCACTGCTACTCAGCTTTTTTTTTTCTTTCAGATTTATAGGAATTTTATTAATTCGGTTAAAACTTCTTTTGGTAC

>Glyma07g05510.3   sequence type=transcript   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGAAACATTTTTTTATTACGAAATGATTGAAAATGGAAATTGATTTGTGAAAATTTTGGCTGGCAACTAGTAGCAACCTTCTTTAAACAAAGCAGAAGGAAGAAGGTGAGAGAGATCCAGAACGATCACGCCCATTGGAGTAAATCGCGTTTCGATTCTCACGACGGAAGAAAGCACGGCGCAGCCTCAAAAAACCAAATGGAAGCACAAAGCTCTCAGCATACACAAGTTATTGAGATCAGTGGTGATTTTCCTGATGGTGGAAGGAAGATTTGTGGGGAAGCACCGTGTGGGTTTGCAGATGCTGGATCCATCTCTAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTTTTCATGGCAGTGGTCCTTTGTGTTATTTTCATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATATTGACTGATGCAGCTCATTTGCTTTCAGATGTTGCATCCTTTGCCATCTCCTTATTTTCATTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAAATGATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTTGTGGTTAATATCATCATGGCATTGTTATTGGGTCATGATCATGGCCACAGACATGCTGGTCACAGTCACGGACACGGACATGATGGTCATGGCCACAGTCATGGATTTACAATGTCTACCCATTGTGATGCAAAGCATACCAAAGATCAGCACCATCACACACACCATCATGATGAAAACCATCCAAAAGATGCTCACCATCATACTGATGAAGATCACTTGCACCATCATGCTCACAAAGAGGTTACTGAACTGCTTCTTGGTGAGTCAAAAGGTGGAACTAAGAAGAAGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTCCATGTTCTTGGGGACTCTATCCAAAGTATTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAACCCTCGTTGGCAAATTGTTGATTTAATCTGCACTCTAATCTTTTCAGTAATTGTTATGGGGACAACCATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACACCTCGTGAGATAGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCCGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTTGCATGTCATGTTAAGATCAGACGTGAAGCAGATGCAGACTTGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAGCGTTAGAATTTTTCTTCTTTAATTGACTATTTTCTGGTAGTAAAGATTAGAGGGGAAGGATTTAGTTGGACTTGAGGAATTGTTCTGGAACTCAAATTTGTCGATGTTCTTATATTCTTCTATCTAGAAGTTTAAGAGTGCAGATATGAGCATTGAATATTTACATGCCAAATTTTTATTATCTGTGATATTATTGTCAAATACTTCACTGCTACTCAGCTTTTTTTTTTCTTTCAGATTTATAGGAATTTTATTAATTCGGTTAAAACTTCTTTTGGTAC

Coding sequences of Glyma07g05510

Limit To All Plant Sequences

>Glyma07g05510.1   sequence type=CDS   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCACAAAGCTCTCAGCATACACAAGTTATTGAGATCAGTGGTGATTTTCCTGATGGTGGAAGGAAGATTTGTGGGGAAGCACCGTGTGGGTTTGCAGATGCTGGATCCATCTCTAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTTTTCATGGCAGTGGTCCTTTGTGTTATTTTCATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATATTGACTGATGCAGCTCATTTGCTTTCAGATGTTGCATCCTTTGCCATCTCCTTATTTTCATTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAAATGATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTTGTGGTTAATATCATCATGGCATTGTTATTGGGTCATGATCATGGCCACAGACATGCTGGTCACAGTCACGGACACGGACATGATGGTCATGGCCACAGTCATGGATTTACAATGTCTACCCATTGTGATGCAAAGCATACCAAAGATCAGCACCATCACACACACCATCATGATGAAAACCATCCAAAAGATGCTCACCATCATACTGATGAAGATCACTTGCACCATCATGCTCACAAAGAGGTTACTGAACTGCTTCTTGGTGAGTCAAAAGGTGGAACTAAGAAGAAGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTCCATGTTCTTGGGGACTCTATCCAAAGTATTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAACCCTCGTTGGCAAATTGTTGATTTAATCTGCACTCTAATCTTTTCAGTAATTGTTATGGGGACAACCATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACACCTCGTGAGATAGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCCGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTTGCATGTCATGTTAAGATCAGACGTGAAGCAGATGCAGACTTGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAGCGTTAG

>Glyma07g05510.2   sequence type=CDS   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCACAAAGCTCTCAGCATACACAAGTTATTGAGATCAGTGGTGATTTTCCTGATGGTGGAAGGAAGATTTGTGGGGAAGCACCGTGTGGGTTTGCAGATGCTGGATCCATCTCTAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTTTTCATGGCAGTGGTCCTTTGTGTTATTTTCATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATATTGACTGATGCAGCTCATTTGCTTTCAGATGTTGCATCCTTTGCCATCTCCTTATTTTCATTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAAATGATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTTGTGGTTAATATCATCATGGCATTGTTATTGGGTCATGATCATGGCCACAGACATGCTGGTCACAGTCACGGACACGGACATGATGGTCATGGCCACAGTCATGGATTTACAATGTCTACCCATTGTGATGCAAAGCATACCAAAGATCAGCACCATCACACACACCATCATGATGAAAACCATCCAAAAGATGCTCACCATCATACTGATGAAGATCACTTGCACCATCATGCTCACAAAGAGGTTACTGAACTGCTTCTTGGTGAGTCAAAAGGTGGAACTAAGAAGAAGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTCCATGTTCTTGGGGACTCTATCCAAAGTATTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAACCCTCGTTGGCAAATTGTTGATTTAATCTGCACTCTAATCTTTTCAGTAATTGTTATGGGGACAACCATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACACCTCGTGAGATAGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCCGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTTGCATGTCATGTTAAGATCAGACGTGAAGCAGATGCAGACTTGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAGCGTTAG

>Glyma07g05510.3   sequence type=CDS   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCACAAAGCTCTCAGCATACACAAGTTATTGAGATCAGTGGTGATTTTCCTGATGGTGGAAGGAAGATTTGTGGGGAAGCACCGTGTGGGTTTGCAGATGCTGGATCCATCTCTAAGGATTCTGAAGAAAGATCAACTTCTATGCGAAAGCTTTTCATGGCAGTGGTCCTTTGTGTTATTTTCATGACTGTTGAAGTGGTTGGTGGCATCAAAGCTAACAGTCTTGCTATATTGACTGATGCAGCTCATTTGCTTTCAGATGTTGCATCCTTTGCCATCTCCTTATTTTCATTATGGGCTGCTGGATGGGAAGCTACACCTCGCCAGTCATATGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATTCAAATGATATGGTTGCTTGCTGGGATTCTGGTATATGAAGCCATTGATAGAATCATTGCTGGTCCTAAAAATGTGGATGGTTTTTTAATGTTTTTAGTTTCTGCATTTGGTCTTGTGGTTAATATCATCATGGCATTGTTATTGGGTCATGATCATGGCCACAGACATGCTGGTCACAGTCACGGACACGGACATGATGGTCATGGCCACAGTCATGGATTTACAATGTCTACCCATTGTGATGCAAAGCATACCAAAGATCAGCACCATCACACACACCATCATGATGAAAACCATCCAAAAGATGCTCACCATCATACTGATGAAGATCACTTGCACCATCATGCTCACAAAGAGGTTACTGAACTGCTTCTTGGTGAGTCAAAAGGTGGAACTAAGAAGAAGAAGCAATGGAACATAAATGTACAGGGGGCTTATCTCCATGTTCTTGGGGACTCTATCCAAAGTATTGGGGTAATGATTGGGGGAGCAGTCATATGGTATAACCCTCGTTGGCAAATTGTTGATTTAATCTGCACTCTAATCTTTTCAGTAATTGTTATGGGGACAACCATCAACATGCTGCGAAACATTTTGGAAGTCCTGATGGAGAGCACACCTCGTGAGATAGATGCTACTAAGCTTGAAAGGGGGCTGTTGGATATGGAAGATGTAGTGGCCGTTCATGAACTGCATATATGGGCCATTACAGTGGGAAAGGTTTTGCTTGCATGTCATGTTAAGATCAGACGTGAAGCAGATGCAGACTTGGTGCTGGACAAGGTTATAGACTATATCAAAAGGGTTTATAACATCAGCCATGTCACCATACAGATAGAGCGTTAG

Predicted protein sequences of Glyma07g05510

Limit To All Plant Sequences

>Glyma07g05510.1   sequence type=predicted peptide   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAQSSQHTQVIEISGDFPDGGRKICGEAPCGFADAGSISKDSEERSTSMRKLFMAVVLCVIFMTVEVVGGIKANSLAILTDAAHLLSDVASFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIDRIIAGPKNVDGFLMFLVSAFGLVVNIIMALLLGHDHGHRHAGHSHGHGHDGHGHSHGFTMSTHCDAKHTKDQHHHTHHHDENHPKDAHHHTDEDHLHHHAHKEVTELLLGESKGGTKKKKQWNINVQGAYLHVLGDSIQSIGVMIGGAVIWYNPRWQIVDLICTLIFSVIVMGTTINMLRNILEVLMESTPREIDATKLERGLLDMEDVVAVHELHIWAITVGKVLLACHVKIRREADADLVLDKVIDYIKRVYNISHVTIQIER*

>Glyma07g05510.2   sequence type=predicted peptide   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAQSSQHTQVIEISGDFPDGGRKICGEAPCGFADAGSISKDSEERSTSMRKLFMAVVLCVIFMTVEVVGGIKANSLAILTDAAHLLSDVASFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIDRIIAGPKNVDGFLMFLVSAFGLVVNIIMALLLGHDHGHRHAGHSHGHGHDGHGHSHGFTMSTHCDAKHTKDQHHHTHHHDENHPKDAHHHTDEDHLHHHAHKEVTELLLGESKGGTKKKKQWNINVQGAYLHVLGDSIQSIGVMIGGAVIWYNPRWQIVDLICTLIFSVIVMGTTINMLRNILEVLMESTPREIDATKLERGLLDMEDVVAVHELHIWAITVGKVLLACHVKIRREADADLVLDKVIDYIKRVYNISHVTIQIER*

>Glyma07g05510.3   sequence type=predicted peptide   gene model=Glyma07g05510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAQSSQHTQVIEISGDFPDGGRKICGEAPCGFADAGSISKDSEERSTSMRKLFMAVVLCVIFMTVEVVGGIKANSLAILTDAAHLLSDVASFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIDRIIAGPKNVDGFLMFLVSAFGLVVNIIMALLLGHDHGHRHAGHSHGHGHDGHGHSHGFTMSTHCDAKHTKDQHHHTHHHDENHPKDAHHHTDEDHLHHHAHKEVTELLLGESKGGTKKKKQWNINVQGAYLHVLGDSIQSIGVMIGGAVIWYNPRWQIVDLICTLIFSVIVMGTTINMLRNILEVLMESTPREIDATKLERGLLDMEDVVAVHELHIWAITVGKVLLACHVKIRREADADLVLDKVIDYIKRVYNISHVTIQIER*

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