SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54160 | AT | Annotation by Michelle Graham. TAIR10: O-methyltransferase 1 | chr5:21982075-21984167 FORWARD LENGTH=363 | SoyBase | E_val: 6.00E-129 | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0051555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flavonol biosynthetic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0030744 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: luteolin O-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0030755 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0033799 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: myricetin 3'-O-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0047763 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: caffeate O-methyltransferase activity | SoyBase | N/A | ISS |
| KOG3178 | KOG | Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases | JGI | ISS | |
| PTHR11746 | Panther | O-METHYLTRANSFERASE | JGI | ISS | |
| PF00891 | PFAM | O-methyltransferase | JGI | ISS | |
| PF08100 | PFAM | Dimerisation domain | JGI | ISS | |
| UniRef100_C6TJM0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJM0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_D3JZ18 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: O-methyltransferase-like protein n=1 Tax=Prunus mume RepID=D3JZ18_PRUMU | SoyBase | E_val: 1.00E-161 | ISS |
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Glyma07g05470 not represented in the dataset |
Glyma07g05470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g048800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05470.1 sequence type=CDS gene model=Glyma07g05470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGAAAAAAGCTTCACCTATGCAATGCAGCTGGTGAACTCTAGCGTGCTATCCATGGCCATGCACTCAGCCATAGAGCTTGGCATTTTTGACATCATAGCCAAAGCAGGTGAAGGTGCCAAATTATCTGCCAAGGACATTGCAGCCAAGCTTCCATGCAAGAATTCAGAAGGAGCCACAATGTTGGATCGTATCCTAAGGCTCCTAGTATGTCACTCCATCATTGACTGCACAGTGGTTGCTGATCAACAACATGGTCCTCCTCCACATCTGCAACGGTTCTATGCCATGAACCCTGTGGCCAAATACTTTGCTTCCATTGATGGTGCTGGCTCACTAGGCCCTTTGATGGTCTTGACTCAGGACAAGGCCCTCCTTCATAGTTGGTACCAATTGAAAGATGCAATTCTAGAAGGAGGTATTCCTTTCAACAGGGTTCATGGAAAACACGTGTTTGAATATTCCGACATGAACTCGAGCTTCAATCAGCTTTTCATGGCAGCTATGACAAACCGTGCAACTTTAATAATGAAGAAGATTGTTGAATCCTACAAGGGGTTTGAGCACCTCAATAGCCTGGTGGACGTTGGAGGTGGCCTTGGTGTCACACTTAACATAGTCACTTCTAAATACCCTCACATTAAGGGTATCAATTTTGACTTGCCACATGTCATAGAACATGCCTCTACCTATCCTGGTGTTGAGCATGTGGGAGGAGATATGTTTGAAAGTGTGCCACAAGGAGATGCCATTTTGATGATGTGTGTACTTCATGATTGGAGTGATGAATGGTGCTTGAAGGTATTAAAGAATTGTTATGCTTCTATTCCTAGTGATGGAAAGGTGATTGTTGTGGATGGAATTCTTCCATTTGAACCAAAGACAACAGGTGCATCAAAGAGCATTTCCCAATTTGATGTACTGATGATGACTACAAACCCAGGAGGGAAGGAGCGAAGTGAAGAGGAATTCATGGCATTGGCAAAAGGAGCTGGATACAGTGGCATTAGATTCACATGCTTTGTCTCTGACTTATGGGTTATGGAGTTCTTCAAGTAA
>Glyma07g05470.1 sequence type=predicted peptide gene model=Glyma07g05470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEEKSFTYAMQLVNSSVLSMAMHSAIELGIFDIIAKAGEGAKLSAKDIAAKLPCKNSEGATMLDRILRLLVCHSIIDCTVVADQQHGPPPHLQRFYAMNPVAKYFASIDGAGSLGPLMVLTQDKALLHSWYQLKDAILEGGIPFNRVHGKHVFEYSDMNSSFNQLFMAAMTNRATLIMKKIVESYKGFEHLNSLVDVGGGLGVTLNIVTSKYPHIKGINFDLPHVIEHASTYPGVEHVGGDMFESVPQGDAILMMCVLHDWSDEWCLKVLKNCYASIPSDGKVIVVDGILPFEPKTTGASKSISQFDVLMMTTNPGGKERSEEEFMALAKGAGYSGIRFTCFVSDLWVMEFFK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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