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Report for Sequence Feature Glyma07g05370

Feature Type:gene_model
Chromosome:Gm07
Start:4014246
stop:4016764
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g05370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35580AT Annotation by Michelle Graham. TAIR10: NAC transcription factor-like 9 | chr4:16888581-16890744 REVERSE LENGTH=512 SoyBaseE_val: 4.00E-40ISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006487GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation SoyBaseN/AISS
GO:0008284GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_G7ZZI3UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7ZZI3_MEDTR SoyBaseE_val: 2.00E-81ISS
UniRef100_I1KHM3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHM3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g05370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g05370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g048100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g05370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g05370
>Glyma07g05370.2   sequence type=transcript   gene model=Glyma07g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTCTCTTATCTTTACTTCCACTGTTGTTTGATTCTTTCCTTGTGCTCAAAATAGTGATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAAGTTAGTTCCATTAATGGATTACTGGCAGCTATTTAGGAGTATATGTTATAAAATATAAATAGTTCTATAATAGCAAATTTATTAGAAAACAATTCTGTATTAGAAATTGCATAATGACAGTTTATGCATAAAAAATAACTATGGCCAGTTTATGTATTGAGATTTAGGAGTATATAATCTAATAGTAAATCTATTACAAAGTATTAAAAACTGCATGATAGAAGTTATTAGGAAGTGTGTGTAGTTGTTTGCAGTTTATGGACAAAGAATACTCGGTGTAGGAGACTTTTGTCTCTAGGACAACAAGTGTATTTTGTATCGATGTATTTTGTGTGATTTTAGTATTCAATAATATATTTTTAGTTTTTGGAGTGTGAGCAAGAAGCCTAGTTTTAAGATGAAAAATAGAGTTATCTCCCCCTATTAACTGAATAAAGGATTGATGAAACAGCTTATTTCATCTTAATAATGCTCAGTTGACCATTGTTTATCTGCAGCAAGGATGTCTTATTATTCTGGACCATAAGGCCTT
Coding sequences of Glyma07g05370
>Glyma07g05370.1   sequence type=CDS   gene model=Glyma07g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATATTGTAGGACTCGGTTTTCGTCCAACAGAAGAAGAACTTGTGGACTTTTACCTCAAACACATGTTGCTCGGCAATGATCCCCGTGCCCACGTCATCCCTGTCATTGATCTTTGCGATGTGGAACCTTGGGATGTACCAGTGATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAA

>Glyma07g05370.2   sequence type=CDS   gene model=Glyma07g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAA
Predicted protein sequences of Glyma07g05370
>Glyma07g05370.1   sequence type=predicted peptide   gene model=Glyma07g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDIVGLGFRPTEEELVDFYLKHMLLGNDPRAHVIPVIDLCDVEPWDVPVMLAKSSSAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGDTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHESQRTFVLCCLIKKPGKATEGGTDALICDEGEPSRSMVSDFENQATAEGIPSEGTFTGMETIFQATPWAENCFSPIQQSPTSIEQEGASFPNYAFNNAYFRNEDNVMRNPFETTKEDEFLNSILAGESIVINEENKHNFVHSSTQSESLKTILLKTRQLRMMGTKI*

>Glyma07g05370.2   sequence type=predicted peptide   gene model=Glyma07g05370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAKSSSAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGDTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHESQRTFVLCCLIKKPGKATEGGTDALICDEGEPSRSMVSDFENQATAEGIPSEGTFTGMETIFQATPWAENCFSPIQQSPTSIEQEGASFPNYAFNNAYFRNEDNVMRNPFETTKEDEFLNSILAGESIVINEENKHNFVHSSTQSESLKTILLKTRQLRMMGTKI*






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