SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35580 | AT | Annotation by Michelle Graham. TAIR10: NAC transcription factor-like 9 | chr4:16888581-16890744 REVERSE LENGTH=512 | SoyBase | E_val: 4.00E-40 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006487 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| PF02365 | PFAM | No apical meristem (NAM) protein | JGI | ISS | |
| UniRef100_G7ZZI3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7ZZI3_MEDTR | SoyBase | E_val: 2.00E-81 | ISS |
| UniRef100_I1KHM3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHM3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g05370 not represented in the dataset |
Glyma07g05370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g048100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05370.2 sequence type=transcript gene model=Glyma07g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTTTCTCTTATCTTTACTTCCACTGTTGTTTGATTCTTTCCTTGTGCTCAAAATAGTGATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAAGTTAGTTCCATTAATGGATTACTGGCAGCTATTTAGGAGTATATGTTATAAAATATAAATAGTTCTATAATAGCAAATTTATTAGAAAACAATTCTGTATTAGAAATTGCATAATGACAGTTTATGCATAAAAAATAACTATGGCCAGTTTATGTATTGAGATTTAGGAGTATATAATCTAATAGTAAATCTATTACAAAGTATTAAAAACTGCATGATAGAAGTTATTAGGAAGTGTGTGTAGTTGTTTGCAGTTTATGGACAAAGAATACTCGGTGTAGGAGACTTTTGTCTCTAGGACAACAAGTGTATTTTGTATCGATGTATTTTGTGTGATTTTAGTATTCAATAATATATTTTTAGTTTTTGGAGTGTGAGCAAGAAGCCTAGTTTTAAGATGAAAAATAGAGTTATCTCCCCCTATTAACTGAATAAAGGATTGATGAAACAGCTTATTTCATCTTAATAATGCTCAGTTGACCATTGTTTATCTGCAGCAAGGATGTCTTATTATTCTGGACCATAAGGCCTT
>Glyma07g05370.1 sequence type=CDS gene model=Glyma07g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGATGATATTGTAGGACTCGGTTTTCGTCCAACAGAAGAAGAACTTGTGGACTTTTACCTCAAACACATGTTGCTCGGCAATGATCCCCGTGCCCACGTCATCCCTGTCATTGATCTTTGCGATGTGGAACCTTGGGATGTACCAGTGATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAA >Glyma07g05370.2 sequence type=CDS gene model=Glyma07g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTAGCAAAATCATCATCAGCTATACGATTTGGTGACCCATATTGGTTTTTCTTCAGCCCTGTTGATTTCAAGTATTCAAGAAGTAAAAGGTTTAACAGGACAACCAAGTGTGGCTTCTGGAAAGCCACTGGGAAAGACCGTGACATTAGGACAGGGGACACTAACACCGTCATTGGGACTAAGAAGACTCTTGTTTACTATCAAGGCCGTGTTTCCTGTGGTGTCAAGTCCAACTGGGTTATTCACGAATATCATGCTGTTACCTTTCATGAAAGCCAGAGGACTTTTGTTTTATGTTGCTTGATCAAGAAACCTGGGAAAGCAACTGAAGGTGGAACTGATGCACTGATCTGCGATGAAGGGGAGCCCAGTAGAAGCATGGTTTCTGACTTTGAAAATCAGGCAACAGCAGAAGGAATTCCATCTGAAGGTACTTTTACCGGAATGGAAACAATCTTTCAGGCAACCCCTTGGGCAGAGAATTGCTTCTCTCCAATACAACAGTCTCCGACTAGTATTGAGCAGGAAGGAGCATCCTTTCCAAACTATGCATTTAACAATGCCTATTTTAGAAATGAAGACAATGTTATGCGGAATCCATTTGAAACTACAAAGGAAGATGAATTCCTGAATTCAATCTTAGCCGGTGAAAGTATAGTTATCAATGAAGAAAATAAGCATAATTTTGTCCATAGCTCCACCCAATCAGAGTCATTGAAGACAATATTATTGAAGACTAGACAACTTCGTATGATGGGAACTAAAATCTAA
>Glyma07g05370.1 sequence type=predicted peptide gene model=Glyma07g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDDDIVGLGFRPTEEELVDFYLKHMLLGNDPRAHVIPVIDLCDVEPWDVPVMLAKSSSAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGDTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHESQRTFVLCCLIKKPGKATEGGTDALICDEGEPSRSMVSDFENQATAEGIPSEGTFTGMETIFQATPWAENCFSPIQQSPTSIEQEGASFPNYAFNNAYFRNEDNVMRNPFETTKEDEFLNSILAGESIVINEENKHNFVHSSTQSESLKTILLKTRQLRMMGTKI* >Glyma07g05370.2 sequence type=predicted peptide gene model=Glyma07g05370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLAKSSSAIRFGDPYWFFFSPVDFKYSRSKRFNRTTKCGFWKATGKDRDIRTGDTNTVIGTKKTLVYYQGRVSCGVKSNWVIHEYHAVTFHESQRTFVLCCLIKKPGKATEGGTDALICDEGEPSRSMVSDFENQATAEGIPSEGTFTGMETIFQATPWAENCFSPIQQSPTSIEQEGASFPNYAFNNAYFRNEDNVMRNPFETTKEDEFLNSILAGESIVINEENKHNFVHSSTQSESLKTILLKTRQLRMMGTKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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