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Report for Sequence Feature Glyma07g05351

Feature Type:gene_model
Chromosome:Gm07
Start:3988558
stop:3992063
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g05351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G49530AT Annotation by Michelle Graham. TAIR10: NAC domain containing protein 62 | chr3:18362639-18364717 REVERSE LENGTH=469 SoyBaseE_val: 2.00E-53ISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007275GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organismal development SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0070417GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to cold SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF02365PFAM No apical meristem (NAM) protein JGI ISS
UniRef100_G7ZZ26UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein n=1 Tax=Medicago truncatula RepID=G7ZZ26_MEDTR SoyBaseE_val: 7.00E-99ISS
UniRef100_UPI0002338517UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338517 related cluster n=1 Tax=unknown RepID=UPI0002338517 SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g05351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05351 not represented in the dataset
Glyma07g05351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05351
ParalogEvidenceComments
Glyma16g01911 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g047900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g05351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g05351
>Glyma07g05351.1   sequence type=CDS   gene model=Glyma07g05351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACAACATAATTTCCATATGTGATCACATGCCTGTAGGATTCAGATTCCGTCCCACAGATGAAGAGCTTGTGAACTATTACCTCAAACACAAGCTTCTTGCCGATGATTTCCCTGTCCACATCATCCCTGAGATCGACCTTTGCAAAGTGGAGCCTTGGGATGTACCAGAAAGATCAGTGATCAAATCCGATGACCCAGAATGGTTTTTCTTCAGTCCTGTGGATTACAAGTACTTGAAGAGTAAAAGGTTTAACAGGACAACCAAGCGTGGCTACTGGAAAACCACTGGGAATGACCGGAACGTTAAGATACCGGGCACCAGCAATGTCATTGGGACTAAGAAGACCCTTGTTTTCCACGAAGGCCGTGGTCCCCGTGGTGTCAAGACCAACTGGGTTATTCATGAATACCATGCTGTTACCTCCCATGAAAGCCAGAGGGCTTTTGTTTTATGCCGCTTGATGAAGAAAGCTGAGAAAAAAAATGAAGGGGGAATTGAGGCACCAACCTTTGATGAAGGGGAGCCCAGTGTACACTTGTTTTCTGACTATGGAAATCAGGTAGATATTATTCCCGGAGTAGATATGGAAGAAATCTTTCAGGCAGTGGATCGGGCCGAGAAATTCTCCCCCCCAGTACAACGGTCTCAAACTGGCATTGGGCTGGAAGATTTTTTCGCAAACTCTCCATTGTTTAATGCCCACTTTGGAAGCGAAAACATCAATATGCAAACTTCACTTGAAGTTACCGACGATGAAGAGTTGGTAAATTCATTTTGGGTTGATGATGAAGAATTTGTTATCAATGAAGAAAGAAGACACTGTTTTGTCAATAGTTCCACCCAACCAAAGTCATTTAGAAGGGTATACAATGAAAGCAGTGAAATAGATGCTGAAGTTGTCTCTAATCTGAATGAACACATTAGTGCTGATGAATACCCTGCACTGAAAATGTTTCAATCATCATATGATGTCCGTGGTGGCACAAGTCGTCTAGCTTCTAACCATAAAGCAAACAAAGAGAAAAAGGAGAGTATCATTCCAGATGATTTTTGGGCAGTGGAGACATCCTCTTGTGACTCAACTGCAGATGAACCAATTGAAATTTCTAGTTCTCCTTCCACTCCAACAAGAATGAAAAATCAGTGTCATCTAAGACCTGACAAGTTCATATTACAAAGAACTGTTGCAGGAAGACCTCAAACACAAAAGAAAGTTTCAAACAATGCAGTCTCCCATGTAGAGGTTCGGAAGGAATTGCTCACTGTGAAATCAGAAAAAGATCAGAAAAATGCTCAAAACGCTAGTTTAAGAGGGAACTTCAAAAACAAAAGCCAACAATCCTCTGATGTCAACAACAATGGTTCTTTCTTTTACATGGAGACGGCTTCAAACCGAAGCCTATTTCCACGTTCGGTGTATCTTGTCAATGTTGTCATAGGGATTTTGTTGTTAATAGTTATTAGTTGGGATGTATTATCATGTTAG
Predicted protein sequences of Glyma07g05351
>Glyma07g05351.1   sequence type=predicted peptide   gene model=Glyma07g05351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENNIISICDHMPVGFRFRPTDEELVNYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPERSVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGYWKTTGNDRNVKIPGTSNVIGTKKTLVFHEGRGPRGVKTNWVIHEYHAVTSHESQRAFVLCRLMKKAEKKNEGGIEAPTFDEGEPSVHLFSDYGNQVDIIPGVDMEEIFQAVDRAEKFSPPVQRSQTGIGLEDFFANSPLFNAHFGSENINMQTSLEVTDDEELVNSFWVDDEEFVINEERRHCFVNSSTQPKSFRRVYNESSEIDAEVVSNLNEHISADEYPALKMFQSSYDVRGGTSRLASNHKANKEKKESIIPDDFWAVETSSCDSTADEPIEISSSPSTPTRMKNQCHLRPDKFILQRTVAGRPQTQKKVSNNAVSHVEVRKELLTVKSEKDQKNAQNASLRGNFKNKSQQSSDVNNNGSFFYMETASNRSLFPRSVYLVNVVIGILLLIVISWDVLSC*






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