Glyma07g05330 - SoyBase

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Report for Sequence Feature Glyma07g05330

Feature Type:	gene_model
Chromosome:	Gm07
Start:	3967633
stop:	3971790
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01560	AT	Annotation by Michelle Graham. TAIR10: Ribosomal RNA processing Brix domain protein \| chr4:677266-679164 REVERSE LENGTH=343	SoyBase	E_val: 0	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0009933	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem structural organization	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010564	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048825	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon development	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0051301	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell division	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2780	KOG	Ribosome biogenesis protein RPF1, contains IMP4 domain	JGI		ISS
PTHR22734	Panther	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	JGI		ISS
PF04427	PFAM	Brix domain	JGI		ISS
PF05843	PFAM	Suppressor of forked protein (Suf)	JGI		ISS
UniRef100_G7ZZ42	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosome production factor n=1 Tax=Medicago truncatula RepID=G7ZZ42_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KHL6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHL6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g05330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05330 not represented in the dataset	Glyma07g05330 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05330

Paralog	Evidence	Comments
Glyma16g01880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g047700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05330

Limit To All Plant Sequences

>Glyma07g05330.2   sequence type=transcript   gene model=Glyma07g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAAAGTAGAGAGAAGAGAAGCAATTACCCCTTTTCATAAAACCCTAGCAAGTAAAAACCGTCCCTTTTCGTTTCTGTTCTCTGTGCTTCGAAAACCCTAACTAAACTCGCGTGGTAGCTCCAATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGACTTGTTTGGGAAGGTTGCATTTTGGACATCTTTTTTGCTGGAAATAGGTTTTATCCGGTGAAGAGGGTTAATTATCTTGAGGTTGTTGGGATCTTTCAACTTAATTCTGGTGTATCATTTTTTTATTTTTTTTTATTGGGGGCTAAAGTCCTATCATCTCTGTAAGCCGTGAGCAATTTTGACCTTACATCTATTGGTGGTTGAGGAAGAGATAACAAAGGTTTCTTATAAGCAAATATATAAGCAATTTTGTATTATGGTCAAAAATATCAAGTAGCATTAGCCTTACAAGTTCACTT

Coding sequences of Glyma07g05330

Limit To All Plant Sequences

>Glyma07g05330.1   sequence type=CDS   gene model=Glyma07g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGTTATTTGCTGGAAATGATGCTGATGAATTTGGTCCAATTTTGAATCAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGA

>Glyma07g05330.2   sequence type=CDS   gene model=Glyma07g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAAAGAGGAAGAAGAGCGATGATGATGATGACGTGGAAGCAGAAGCAGAAGCTTCAGGTTGGAAGAAGAAAACGAGAACGACGTCGGAGAGAGAGAAGGAGAAGAAGGAGCCATTGCGTCCTTCGATGATAAAGAACAAGGAGAAGCGATCGGAGCTGCACGCGAAACTGAAGCACCAGAAGAAGCTCGAGAAGCGCGCCAAGGCCAAGGCTCGGGACGCTGCTCTCAAGAAAGCTCTCGAGCTCGGCGAGGAGCCTCCAGAGAAGAAGGTCCCTCGCACTATCGAGAACACGAGGGAACTCGACGAGACCGTTTGCAAGCCCGATGACGAAGAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCCATTCTACTAGGGGACCTGCTTTTATATCAGAGTTGCTTTCAGTTATACCAAATGCACATTACTTCAAGAGAGGAACATATGATCTGAAAAAGATTGTAGAATATGCAAAGAAGAAGGACTTCACTTCTATTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTTTAATCATAGGTGTACCTGATGGGCCTACTGCTCATTTCAAGCTCTCGAAACTTGTTTTGCGCAAGGATATCAAGAATCATGGAAATCCAACCGGTCACAAGCCCGAGCTTGTATTGAATAACTTCACAACACGTCTAGGGCATCGAGTTGGAAGGTTGATACAGTCACTTTTCCCACAAGATCCAGAATTTAAAGGCCGGCGAGTAGTCACTTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTTGAAACCAAAGAAGTTAAAAAAGCAGAGTCCAAAGGTAAAAAGGACAAAGATGGCGAGAGTGAGAATGTTCCTGAACAGAAAACAATTGCCCGACTTCAGGAATGTGGTCCTCGTTTCACATTAAAATTGATTAGCCTGCAGCATGGAACATTTGACACCAAGGGTGGGGAATATGAGTGGGTTCACAAGCCGGAAATGGACACTAGCCGAAGGAGGTTCTTCCTATGA

Predicted protein sequences of Glyma07g05330

Limit To All Plant Sequences

>Glyma07g05330.1   sequence type=predicted peptide   gene model=Glyma07g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGKRKKSDDDDDVEAEAEASGWKKKTRTTSEREKEKKEPLRPSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRELDETVCKPDDEELFAGNDADEFGPILNQQQTPKILITTCRFHSTRGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*

>Glyma07g05330.2   sequence type=predicted peptide   gene model=Glyma07g05330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGKRKKSDDDDDVEAEAEASGWKKKTRTTSEREKEKKEPLRPSMIKNKEKRSELHAKLKHQKKLEKRAKAKARDAALKKALELGEEPPEKKVPRTIENTRELDETVCKPDDEEQQTPKILITTCRFHSTRGPAFISELLSVIPNAHYFKRGTYDLKKIVEYAKKKDFTSIIVVHTNRREPDALLIIGVPDGPTAHFKLSKLVLRKDIKNHGNPTGHKPELVLNNFTTRLGHRVGRLIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEVKKAESKGKKDKDGESENVPEQKTIARLQECGPRFTLKLISLQHGTFDTKGGEYEWVHKPEMDTSRRRFFL*

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