Report for Sequence Feature Glyma07g05320
Feature Type: gene_model
Chromosome: Gm07
Start: 3963068
stop: 3965547
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g05320
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G61470 AT
Annotation by Michelle Graham. TAIR10: photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257
SoyBase E_val: 2.33E-156 ISS
GO:0009765 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting
SoyBase N/A ISS
GO:0009768 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I
SoyBase N/A ISS
GO:0015979 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009534 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0009579 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: thylakoid
SoyBase N/A ISS
GO:0009782 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: photosystem I antenna complex
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0030076 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex
SoyBase N/A ISS
GO:0016168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding
SoyBase N/A ISS
PTHR21649 Panther
CHLOROPHYLL A/B BINDING PROTEIN
JGI ISS
PF00504 PFAM
Chlorophyll A-B binding protein
JGI ISS
UniRef100_B9GML1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Light-harvesting complex I protein Lhca2 n=1 Tax=Populus trichocarpa RepID=B9GML1_POPTR
SoyBase E_val: 2.00E-170 ISS
UniRef100_I1KHL4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHL4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g05320
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g05320
Paralog Evidence Comments
Glyma16g01870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g05320 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g047600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g05320
Transcripts of Glyma07g05320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g05320.2 sequence type=transcript gene model=Glyma07g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GAGATTCTGCATGCCACATGGCAACCCACCATCTAATTTCTGATTCACAGTCCTATCCTTTGAGATAAGAGCACACGTTTAACAAAATGCTATTCTCTATTTCTCATCACTTTAATCACGCACTATCAGTACAACAACTCACTCACTAAGCTAAACAATTTCATCAAGCCTGCCATGGCTTCCTCGTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCCACACCAAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGAGAAGGGTTGGAACAACTCTATGATTGCAAGCCTTGGAGAAACATTGGGAAACTTGTTTAACTAAGTTGTAAGGCTTAAATGTCTTTAGGGGGGAGTTTTTATGTTGGTGAAAGCTTGTAAAATGGTACTTCTATTGTCATGCACAGATTGATTATTCAATGTACAAATACCTATTTAAGTTTAGATGCATTTAATGTAAATTCAGGAAGTAATCACAGTTTTTGCATGGATGATAGGGCTGCAACAATATCTGATAGTAACTAGCACGGGATATTAGATGGTCTTGTTAACCTGCCGAATCTTCATTTCACATTTCCTCAAAAATCAG
Coding sequences of Glyma07g05320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g05320.1 sequence type=CDS gene model=Glyma07g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCCTTAGTTTAGTTGAATCATTCTTTGAAATCAACCTAGTACTGATTATTAAACTATATGTTAAAATAAATCATGAAATTGCATGCAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGA
>Glyma07g05320.2 sequence type=CDS gene model=Glyma07g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCCTCGTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCCACACCAAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGA
Predicted protein sequences of Glyma07g05320
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g05320.1 sequence type=predicted peptide gene model=Glyma07g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MILSLVESFFEINLVLIIKLYVKINHEIACSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK*
>Glyma07g05320.2 sequence type=predicted peptide gene model=Glyma07g05320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSCASSAIAAVAISTPSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK*