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Report for Sequence Feature Glyma07g05320

Feature Type:gene_model
Chromosome:Gm07
Start:3963068
stop:3965547
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G61470AT Annotation by Michelle Graham. TAIR10: photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257 SoyBaseE_val: 2.33E-156ISS
GO:0009765GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting SoyBaseN/AISS
GO:0009768GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light harvesting in photosystem I SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009782GO-cc Annotation by Michelle Graham. GO Cellular Compartment: photosystem I antenna complex SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0030076GO-cc Annotation by Michelle Graham. GO Cellular Compartment: light-harvesting complex SoyBaseN/AISS
GO:0016168GO-mf Annotation by Michelle Graham. GO Molecular Function: chlorophyll binding SoyBaseN/AISS
PTHR21649Panther CHLOROPHYLL A/B BINDING PROTEIN JGI ISS
PF00504PFAM Chlorophyll A-B binding protein JGI ISS
UniRef100_B9GML1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Light-harvesting complex I protein Lhca2 n=1 Tax=Populus trichocarpa RepID=B9GML1_POPTR SoyBaseE_val: 2.00E-170ISS
UniRef100_I1KHL4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHL4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g01870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g047600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g05320.2   sequence type=transcript   gene model=Glyma07g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGATTCTGCATGCCACATGGCAACCCACCATCTAATTTCTGATTCACAGTCCTATCCTTTGAGATAAGAGCACACGTTTAACAAAATGCTATTCTCTATTTCTCATCACTTTAATCACGCACTATCAGTACAACAACTCACTCACTAAGCTAAACAATTTCATCAAGCCTGCCATGGCTTCCTCGTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCCACACCAAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGAGAAGGGTTGGAACAACTCTATGATTGCAAGCCTTGGAGAAACATTGGGAAACTTGTTTAACTAAGTTGTAAGGCTTAAATGTCTTTAGGGGGGAGTTTTTATGTTGGTGAAAGCTTGTAAAATGGTACTTCTATTGTCATGCACAGATTGATTATTCAATGTACAAATACCTATTTAAGTTTAGATGCATTTAATGTAAATTCAGGAAGTAATCACAGTTTTTGCATGGATGATAGGGCTGCAACAATATCTGATAGTAACTAGCACGGGATATTAGATGGTCTTGTTAACCTGCCGAATCTTCATTTCACATTTCCTCAAAAATCAG

>Glyma07g05320.1   sequence type=CDS   gene model=Glyma07g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCCTTAGTTTAGTTGAATCATTCTTTGAAATCAACCTAGTACTGATTATTAAACTATATGTTAAAATAAATCATGAAATTGCATGCAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGA

>Glyma07g05320.2   sequence type=CDS   gene model=Glyma07g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTCGTGTGCTTCCTCTGCCATTGCAGCTGTTGCCATCTCCACACCAAGTTCCCAGAAGAATGGATCACTCTTGGGAAGCACAAAAGCTTCTTTTCTTAGTGGGAGGAAACTGAAGGTGAACAGTTTTACAGCACCAGTTGGAGCACGATCCAGCACTACAGTGTGTGCAGTTGCTGAGCCTGATAGGCCTCTGTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTAGATGGCAGTTTGCCAGGAGATTTTGGCTTTGATCCCCTAGGTCTTGGATCTGATCCTGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTGCACTGCAGATGGGCCATGTTGGGAGCTGCTGGCATTTTCATCCCAGAATTCCTCACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGTTGGAGTACTTCACAGACACTACCACACTCTTCGTAGTTGAGCTCTTTTTCATTGGTTGGGCCGAGGGTAGAAGGTGGGCTGATATCATCAAGCCAGGCTGTGTCAACACTGACCCTATCTTTCCCAACAACAAGCTCACAGGAACTGATGTTGGGTACCCAGGTGGGCTTTGGTTTGATCCACTTGGCTGGGGAAGTGGTTCTCCTGAGAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGGTTGGCCATGTTGGCTGTGATGGGGGCATGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCTCACCTTGCAGATCCTGGTCATGCTACTATTTTTGCTGCTTTCACTCCCAAGTGA

>Glyma07g05320.1   sequence type=predicted peptide   gene model=Glyma07g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MILSLVESFFEINLVLIIKLYVKINHEIACSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK*

>Glyma07g05320.2   sequence type=predicted peptide   gene model=Glyma07g05320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSCASSAIAAVAISTPSSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSSTTVCAVAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFTPK*







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