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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G53710 | AT | Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein | chr1:20053339-20056271 REVERSE LENGTH=528 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006882 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis | SoyBase | N/A | ISS |
| GO:0009624 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nematode | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0004722 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG3662 | KOG | Cell division control protein/predicted DNA repair exonuclease | JGI | ISS | |
| PTHR13315 | Panther | METALLO PHOSPHOESTERASE RELATED | JGI | ISS | |
| PF00149 | PFAM | Calcineurin-like phosphoesterase | JGI | ISS | |
| UniRef100_G7L9Y4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine phosphatase-like protein n=1 Tax=Medicago truncatula RepID=G7L9Y4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KHK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHK7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g05270 not represented in the dataset |
Glyma07g05270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g047100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05270.2 sequence type=transcript gene model=Glyma07g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTCATACATAACAATTTTTAAAAATAATTATTTTTTTCATTTTTTCCTACCAATATCTTTTCTAACAGTAATAACTAATAATCAGTAGCATGATCTGATCGTGTTTTTTTTTTTCTTATGCAGAATCTGATAGAGTGTAGTTTGCGATGAGTGAAGCAATGAATCATTGATTTGATTCGTATCAGCATCGGTGATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAGAGATGAAATTCCTATCAGAGTGATATCATTCAGGTTTTACACTCACTTTTTTTAAAATGATAATTTGTAGATCCAATTAGATGTTCAAGAAGGTAATTACCATCAACATGATGTAATTAATCATATGTTGATGCTTTTGTATGTTTACATGGTAGCTTGAAAACTCTTTTAATTATTCATGGCATGGCCATGATCATACAATATGAAGTATAACATGATTTTGTCAGTTGAGTTATTCTATTACTGTTGAGATTTCCTCTGAAGTCTGAACTCTTGTTATTTGCAGAGTTTGCTCTAAAGTTTACATAGCAGTCATTTAATTTCAATG
>Glyma07g05270.1 sequence type=CDS gene model=Glyma07g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGGTATATTGTGCTATTTATTCTGACCCTTCTTGCTGCCCTATTTTGGCCAACAAGTGGCACGAGTTTCTGGCATCAGTGTTGCGGCTTATTTGGCTATTGTAAACAACTAATAGCTTGCATCTTTTCTAGAAGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAG >Glyma07g05270.2 sequence type=CDS gene model=Glyma07g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAG
>Glyma07g05270.1 sequence type=predicted peptide gene model=Glyma07g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQLELTLLLCLFWALTLLYGEMFAYWVPPIFTCSWPHLLRTSSSSMVETDSGNYQADYVKVAVIADPQLMDKTSLRLPAKSLALELVEFYTDLNMRRSFVASVLPFKPDVILLLGDYFDGGPYLSDEEWQESFNRFRHIFGLNAQGKYTDMPVYYIPGNHDIGYESLHSLKPEVIRRYEETFGIRNYRFTVGKVDFIAVDAQTLDGHPQNLLTSQTWDFVKNISADDVVHPRVLLTHIPLYRRDDTYCGPDRSSPIINQRIRHSLNGNTNDISYQNYVSEKSSKYLLDTIKPKLILSGHDHDQCTVSHQSKSGPVNEHTLGTISWQQGNLYPSFMLLSVDNSTHPNASIPKEALLTHLCYLPMQTHIYIWYIVLFILTLLAALFWPTSGTSFWHQCCGLFGYCKQLIACIFSRSETKEKDEDANYEYEMMWDAEGTMHLVKKTLNASTVNSNDQSLGERGYVVMRAAARKNTAQEGDLSVNVDMASGIGLDPVAKMPPRTGKSKTKIIVQRLIRTLRMLTVISAVNVPLYMMLLFKDWIDK* >Glyma07g05270.2 sequence type=predicted peptide gene model=Glyma07g05270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQLELTLLLCLFWALTLLYGEMFAYWVPPIFTCSWPHLLRTSSSSMVETDSGNYQADYVKVAVIADPQLMDKTSLRLPAKSLALELVEFYTDLNMRRSFVASVLPFKPDVILLLGDYFDGGPYLSDEEWQESFNRFRHIFGLNAQGKYTDMPVYYIPGNHDIGYESLHSLKPEVIRRYEETFGIRNYRFTVGKVDFIAVDAQTLDGHPQNLLTSQTWDFVKNISADDVVHPRVLLTHIPLYRRDDTYCGPDRSSPIINQRIRHSLNGNTNDISYQNYVSEKSSKYLLDTIKPKLILSGHDHDQCTVSHQSKSGPVNEHTLGTISWQQGNLYPSFMLLSVDNSTHPNASIPKEALLTHLCYLPMQTHIYICETKEKDEDANYEYEMMWDAEGTMHLVKKTLNASTVNSNDQSLGERGYVVMRAAARKNTAQEGDLSVNVDMASGIGLDPVAKMPPRTGKSKTKIIVQRLIRTLRMLTVISAVNVPLYMMLLFKDWIDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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