Glyma07g05270 - SoyBase

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Report for Sequence Feature Glyma07g05270

Feature Type:	gene_model
Chromosome:	Gm07
Start:	3914778
stop:	3921220
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g05270

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53710	AT	Annotation by Michelle Graham. TAIR10: Calcineurin-like metallo-phosphoesterase superfamily protein \| chr1:20053339-20056271 REVERSE LENGTH=528	SoyBase	E_val: 0	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006882	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3662	KOG	Cell division control protein/predicted DNA repair exonuclease	JGI		ISS
PTHR13315	Panther	METALLO PHOSPHOESTERASE RELATED	JGI		ISS
PF00149	PFAM	Calcineurin-like phosphoesterase	JGI		ISS
UniRef100_G7L9Y4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine phosphatase-like protein n=1 Tax=Medicago truncatula RepID=G7L9Y4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KHK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHK7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g05270

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g05270 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g047100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g05270

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g05270

Limit To All Plant Sequences

>Glyma07g05270.2   sequence type=transcript   gene model=Glyma07g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCATACATAACAATTTTTAAAAATAATTATTTTTTTCATTTTTTCCTACCAATATCTTTTCTAACAGTAATAACTAATAATCAGTAGCATGATCTGATCGTGTTTTTTTTTTTCTTATGCAGAATCTGATAGAGTGTAGTTTGCGATGAGTGAAGCAATGAATCATTGATTTGATTCGTATCAGCATCGGTGATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAGAGATGAAATTCCTATCAGAGTGATATCATTCAGGTTTTACACTCACTTTTTTTAAAATGATAATTTGTAGATCCAATTAGATGTTCAAGAAGGTAATTACCATCAACATGATGTAATTAATCATATGTTGATGCTTTTGTATGTTTACATGGTAGCTTGAAAACTCTTTTAATTATTCATGGCATGGCCATGATCATACAATATGAAGTATAACATGATTTTGTCAGTTGAGTTATTCTATTACTGTTGAGATTTCCTCTGAAGTCTGAACTCTTGTTATTTGCAGAGTTTGCTCTAAAGTTTACATAGCAGTCATTTAATTTCAATG

Coding sequences of Glyma07g05270

Limit To All Plant Sequences

>Glyma07g05270.1   sequence type=CDS   gene model=Glyma07g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGGTATATTGTGCTATTTATTCTGACCCTTCTTGCTGCCCTATTTTGGCCAACAAGTGGCACGAGTTTCTGGCATCAGTGTTGCGGCTTATTTGGCTATTGTAAACAACTAATAGCTTGCATCTTTTCTAGAAGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAG

>Glyma07g05270.2   sequence type=CDS   gene model=Glyma07g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCAACTCGAGTTAACTCTGTTGCTGTGCCTCTTTTGGGCACTAACCCTTCTCTATGGTGAGATGTTCGCTTACTGGGTTCCGCCCATCTTCACCTGTTCCTGGCCCCATCTTCTCCGCACCTCTTCGTCTTCAATGGTTGAAACAGACAGCGGGAACTATCAAGCTGATTATGTTAAAGTTGCTGTTATCGCAGATCCACAGCTCATGGATAAAACTTCTCTCCGTCTTCCTGCAAAATCACTTGCACTGGAACTTGTGGAATTCTACACTGATTTAAACATGCGTAGATCATTCGTTGCATCTGTCCTGCCTTTCAAACCTGATGTCATATTACTTTTAGGTGATTACTTTGATGGAGGTCCTTATTTATCAGATGAAGAATGGCAGGAGTCTTTCAATCGCTTCAGGCATATCTTTGGTTTGAATGCACAAGGAAAATACACAGACATGCCAGTTTACTATATTCCGGGAAACCATGATATTGGGTATGAAAGTCTTCATTCTCTAAAGCCAGAGGTTATCCGACGCTATGAGGAAACATTTGGGATTAGGAACTACAGATTTACAGTTGGCAAAGTGGATTTTATTGCCGTTGATGCACAAACTCTGGATGGACACCCACAAAATCTTCTGACTTCTCAAACTTGGGATTTTGTGAAGAATATCTCTGCTGATGATGTGGTTCATCCAAGAGTCTTATTGACACATATTCCTTTATATCGACGTGATGATACGTACTGTGGTCCTGATCGTAGTTCCCCAATTATCAATCAGAGGATACGTCACAGTCTAAATGGCAATACTAATGATATATCGTATCAAAATTATGTTTCTGAGAAGTCATCAAAGTACTTACTAGATACAATCAAACCTAAGCTTATTTTATCTGGTCATGATCATGATCAGTGCACTGTCAGTCATCAATCTAAATCTGGGCCTGTAAACGAGCACACCCTAGGTACTATAAGTTGGCAACAAGGAAACTTGTATCCTTCTTTCATGCTGTTATCAGTTGATAACTCAACTCATCCAAATGCTTCCATTCCTAAAGAGGCTTTGTTGACTCATCTATGTTACCTTCCCATGCAAACACACATTTACATATGCGAAACGAAAGAAAAGGATGAGGACGCTAACTATGAATATGAGATGATGTGGGATGCAGAAGGAACAATGCATCTTGTAAAGAAAACCTTGAATGCATCTACTGTAAATTCAAATGACCAGAGCTTAGGGGAAAGGGGTTACGTTGTGATGCGAGCAGCGGCTAGAAAAAATACTGCTCAGGAAGGAGATCTCTCTGTGAATGTGGATATGGCTTCAGGCATTGGTCTTGATCCTGTAGCAAAAATGCCTCCCAGAACGGGCAAATCAAAGACAAAAATTATAGTCCAGAGATTGATACGCACACTGCGAATGCTTACTGTCATTTCAGCAGTGAATGTTCCTCTTTACATGATGTTGCTATTCAAGGATTGGATTGATAAATAG

Predicted protein sequences of Glyma07g05270

Limit To All Plant Sequences

>Glyma07g05270.1   sequence type=predicted peptide   gene model=Glyma07g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLELTLLLCLFWALTLLYGEMFAYWVPPIFTCSWPHLLRTSSSSMVETDSGNYQADYVKVAVIADPQLMDKTSLRLPAKSLALELVEFYTDLNMRRSFVASVLPFKPDVILLLGDYFDGGPYLSDEEWQESFNRFRHIFGLNAQGKYTDMPVYYIPGNHDIGYESLHSLKPEVIRRYEETFGIRNYRFTVGKVDFIAVDAQTLDGHPQNLLTSQTWDFVKNISADDVVHPRVLLTHIPLYRRDDTYCGPDRSSPIINQRIRHSLNGNTNDISYQNYVSEKSSKYLLDTIKPKLILSGHDHDQCTVSHQSKSGPVNEHTLGTISWQQGNLYPSFMLLSVDNSTHPNASIPKEALLTHLCYLPMQTHIYIWYIVLFILTLLAALFWPTSGTSFWHQCCGLFGYCKQLIACIFSRSETKEKDEDANYEYEMMWDAEGTMHLVKKTLNASTVNSNDQSLGERGYVVMRAAARKNTAQEGDLSVNVDMASGIGLDPVAKMPPRTGKSKTKIIVQRLIRTLRMLTVISAVNVPLYMMLLFKDWIDK*

>Glyma07g05270.2   sequence type=predicted peptide   gene model=Glyma07g05270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKQLELTLLLCLFWALTLLYGEMFAYWVPPIFTCSWPHLLRTSSSSMVETDSGNYQADYVKVAVIADPQLMDKTSLRLPAKSLALELVEFYTDLNMRRSFVASVLPFKPDVILLLGDYFDGGPYLSDEEWQESFNRFRHIFGLNAQGKYTDMPVYYIPGNHDIGYESLHSLKPEVIRRYEETFGIRNYRFTVGKVDFIAVDAQTLDGHPQNLLTSQTWDFVKNISADDVVHPRVLLTHIPLYRRDDTYCGPDRSSPIINQRIRHSLNGNTNDISYQNYVSEKSSKYLLDTIKPKLILSGHDHDQCTVSHQSKSGPVNEHTLGTISWQQGNLYPSFMLLSVDNSTHPNASIPKEALLTHLCYLPMQTHIYICETKEKDEDANYEYEMMWDAEGTMHLVKKTLNASTVNSNDQSLGERGYVVMRAAARKNTAQEGDLSVNVDMASGIGLDPVAKMPPRTGKSKTKIIVQRLIRTLRMLTVISAVNVPLYMMLLFKDWIDK*

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