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Report for Sequence Feature Glyma07g05090

Feature Type:gene_model
Chromosome:Gm07
Start:3762777
stop:3764267
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g05090
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14260AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF567) | chr3:4747986-4748779 REVERSE LENGTH=230 SoyBaseE_val: 2.00E-47ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10233Panther TRANSLATION INITIATION FACTOR EIF-2B JGI ISS
PTHR10233:SF7Panther TRANSLATION INITIATION FACTOR EIF-2B ALPHA SUBUNIT JGI ISS
PF04525PFAM Protein of unknown function (DUF567) JGI ISS
UniRef100_B9T3Y3UniRef Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T3Y3_RICCO SoyBaseE_val: 5.00E-69ISS
UniRef100_C6T4M9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T4M9_SOYBN SoyBaseE_val: 2.00E-145ISS

Expression Patterns of Glyma07g05090
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g05090 not represented in the dataset
Glyma07g05090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g05090
ParalogEvidenceComments
Glyma16g01580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g05090 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g045500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g05090
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g05090
>Glyma07g05090.1   sequence type=CDS   gene model=Glyma07g05090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCATACAATTTCAACCATGGGAAAAGTTCACCCCCAAGCACTAAATTCCTCTACCACTTGCAAGCAAGAGACGTTTACCCTATGGATGAAATCTCTGGTACTGAACGGAAAGGGATGCACCGTGTTTGATTCAAATGGCCAAATTGCATACCGAGTTGATAACTACAACTGCAGGCATAGAGATGAAGTTCATCTCATGGATCAAAATGGCGATATTTTGTTCACTATGCTGAAAAAGCAATATAAGTTGTCCAGGTTTTGGGAGGGTTATAGATTTCCAGTTCCAGGAACAAGGAATGACCACAAAGGACCATGCTTTCGAGTTTCAAAAACTTATAAGATCTCTAGAGGGGGTTCAACCTATGAAGTTGAACTTGGATTGGACAAAAATCAACCGTATACTCATAAAATAGAACGCAACACTTGCAACTCAGCTTGCAAAATATCTAACGAGCTTGGAGTGGTAGTTGCAGAGCTAAGGAGAAAGAAGTCACCTTGTGGAGTTGATTTAGGAGATGATGTTTTCACGATGGTAGTGGAGCCAAATATAGATCTTTCTCTAATTATGGGGCTTGTTGTAGCCTACAATCTTATAAACTGTAAAATTTAA
Predicted protein sequences of Glyma07g05090
>Glyma07g05090.1   sequence type=predicted peptide   gene model=Glyma07g05090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHTISTMGKVHPQALNSSTTCKQETFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNCRHRDEVHLMDQNGDILFTMLKKQYKLSRFWEGYRFPVPGTRNDHKGPCFRVSKTYKISRGGSTYEVELGLDKNQPYTHKIERNTCNSACKISNELGVVVAELRRKKSPCGVDLGDDVFTMVVEPNIDLSLIMGLVVAYNLINCKI*






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