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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G12260 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: glycosyltransferase family protein 2 (TAIR:AT5G60700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3966417-3968684 FORWARD LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| UniRef100_B9SC29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SC29_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KHI8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHI8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g05080 not represented in the dataset |
Glyma07g05080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g01575 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g045400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05080.2 sequence type=transcript gene model=Glyma07g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTGATAAAAATGAATAATTTTAAGGTGGCTGCGTCGGCGTCGTTTCACATGTTCATCGTTGAGATCTGTCTCCTCCTTCTCCTTCTGGAAAACCCCAACTTGCACTCTGTTATGCCGATGCATGAATGAATCTTTCCTCTCCGAAACCCTAACCAATGGTGGGACCCAAACGGCACTTCCTCCCACTGATCCTCATCTCCCTCGCCGCCTTCATCTTCTACAGCTTCCACCACTCTTCTCTCCCATCTTCAATCCTCGAATCCAACCCTACTTCCACTTTCCCCAACCCAATTCGCACCCAATCTTCCCCCAATTTCACTTTTGTCATCAAGGTCCTCGCCTTCAACCGCCTCGCCGCGCTCTCCCGGTGCCTCCGCTCCCTCGCCGCCGCCCACTACCTCGCCGACCGCGTCCACCTCCATCTCCATATTGACCATTTCGCCCCCGATAACGCCTCCCACGTGGACCCCAAGCTCCGCGAAGCGCATCAGATCCTGGAGTTCGTCGATGGGTTCGATTGGAAGTTTGGGGAAAAGGTTGTGCATTACAGAACGGGCAATGTGGGCCTGCAGGCCCAGTGGTTGGAGGCCTGGTGGCCCAGTTCCGATCACGAGTTCGCTTTCGTCGTGGAGGATGACTTGGAGGTTTCGCCGCTTTACTACGAGTTCGTTAAGGCTTTGATTATGAATTTCTATTACAATGCCTCCAATTATAGCCCTTCCATCTTTGGGGTTTCGCTGCAGCGAGCAAGGTAAACATGGAAACAAATTGCAGTTGGATGACCAGACACGACTTTTCCTATACCAGTTAGTTGGCACATGGGGTCAAATTCTCTTTCCAAAGCCATGGAAGGAGTTCAGACTTTGGTACGACGAGAACAAGGCAAAGGGCAATAAGCCATTTCTTGAGGGGATGGTGACCACCGGATGGTATAAGAAAATGGGAGAGAGGATTTGGACACCTTGGTTCATAAAGTTTATTCAATCCCGTGGTTATTTTAATATCTACACAAATCTTCTGCATGAGAGAGCATTAAGTGTTTCTCACAGAGATGCTGGAGTTAACTACGGGAAAACTGCTGGACCTGATTCTAAATTACTAGAGGAAAAATCTCTAGACTTCAATATATTGGAAGTGCAACCTTTGAGGAGTTTAAGATGGTATGATTTTTGTTTCAGAGAAGTACATCCTGGAAAGGTTGCCACGAACTTGGAAGAACTTGGATCATTGCTTCACTCTCTGCAGAAACAGGATAGTGTCTTCTTAGTAAATCTTTTTGGGGTATCAGATGCTATATCAAGAAACTTACTATGCCACTTTGAGAGGCTAGATATCAGGAATTATATACTTATGGGCCCTCCATCTGACTCCTTATTTGATCTGGCAAGGAGGGGACACCCTGTAATTAACGTTGACAAATTTATAAGTAGTGTTGGATTGTCTAAATTCACTTCACAAGGTTTGAGTTTTGAGACCATCAAGGGTATTCTGGCAAAGACTTATGCAATTAAGAAGTGTATTGAGAATAGGTATAACACGTGGGTTATGGATGGGAGCATGCTTCTCACTTCAGACCTCTTCTTGTCTGAGTCTGAAGATTCCAATGGTGACTTCTTTGTTGCAAACAACTTGGAACTCTTTTATGCTAAAAGCTCATCTTCTAGTCAGAAAATCTGGGTTGATGGCTTTGTGTCAAAGGTTGTAGCCATGGCGGAGTCTTTGGCAGGAAAAGATTCAGCAACCCATGGTAGCTTAAGTTTCGTGTATGTTGTAATAAAATTATTGGAACAGAATGGTGCGAGGATTAGAAGAGTTGATGAGAATTCTTTTGCCACAAAGATTGGCTCTGGTAGTGAAACTTCTCTTCGGGATAAGAAGTTGGTATATTGGTCAAGTGAGATGGAGCTGAATTCAATTCAGAAATGGCTCGACGAGTTCAATTTGTGGAGCATAGACAGTGATTTGTCATGCACCGCGGTGGTCTGCCACAAATCCTAGCTAGCATTTTATGGCAGCTATAGTATTTTTACATCTTTCTTTTTTTTTTTTTGCTTTGCTATTACTATTTTTGACTTTTTAAATGCCAATTTAGCTTACATATTCTTTTTACCCATTTTGTATTATCAGTTGTAACTAAAATTAAGTTGTCAATGCGAGGCTTAAGATGGGAAATTAATTTTTCAGTCGAATTTTGTTGT
>Glyma07g05080.1 sequence type=CDS gene model=Glyma07g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGGACCCAAACGGCACTTCCTCCCACTGATCCTCATCTCCCTCGCCGCCTTCATCTTCTACAGCTTCCACCACTCTTCTCTCCCATCTTCAATCCTCGAATCCAACCCTACTTCCACTTTCCCCAACCCAATTCGCACCCAATCTTCCCCCAATTTCACTTTTGTCATCAAGGTCCTCGCCTTCAACCGCCTCGCCGCGCTCTCCCGGTGCCTCCGCTCCCTCGCCGCCGCCCACTACCTCGCCGACCGCGTCCACCTCCATCTCCATATTGACCATTTCGCCCCCGATAACGCCTCCCACGTGGACCCCAAGCTCCGCGAAGCGCATCAGATCCTGGAGTTCGTCGATGGGTTCGATTGGAAGTTTGGGGAAAAGGTTGTGCATTACAGAACGGGCAATGTGGGCCTGCAGGCCCAGTGGTTGGAGGCCTGGTGGCCCAGTTCCGATCACGAGTTCGCTTTCGTCGTGGAGGATGACTTGGAGGTTTCGCCGCTTTACTACGAGTTCGTTAAGGCTTTGATTATGAATTTCTATTACAATGCCTCCAATTATAGCCCTTCCATCTTTGGGGTTTCGCTGCAGCGAGCAAGGTTTGTTCCAGGTAAACATGGAAACAAATTGCAGTTGGATGACCAGACACGACTTTTCCTATACCAGTTAGTTGGCACATGGGGTCAAATTCTCTTTCCAAAGCCATGGAAGGAGTTCAGACTTTGGTACGACGAGAACAAGGCAAAGGGCAATAAGCCATTTCTTGAGGGGATGGTGACCACCGGATGGTATAAGAAAATGGGAGAGAGGATTTGGACACCTTGGTTCATAAAGTTTATTCAATCCCGTGGTTATTTTAATATCTACACAAATCTTCTGCATGAGAGAGCATTAAGTGTTTCTCACAGAGATGCTGGAGTTAACTACGGGAAAACTGCTGGACCTGATTCTAAATTACTAGAGGAAAAATCTCTAGACTTCAATATATTGGAAGTGCAACCTTTGAGGAGTTTAAGATGGTATGATTTTTGTTTCAGAGAAGTACATCCTGGAAAGGTTGCCACGAACTTGGAAGAACTTGGATCATTGCTTCACTCTCTGCAGAAACAGGATAGTGTCTTCTTAGTAAATCTTTTTGGGGTATCAGATGCTATATCAAGAAACTTACTATGCCACTTTGAGAGGCTAGATATCAGGAATTATATACTTATGGGCCCTCCATCTGACTCCTTATTTGATCTGGCAAGGAGGGGACACCCTGTAATTAACGTTGACAAATTTATAAGTAGTGTTGGATTGTCTAAATTCACTTCACAAGGTTTGAGTTTTGAGACCATCAAGGGTATTCTGGCAAAGACTTATGCAATTAAGAAGTGTATTGAGAATAGGTATAACACGTGGGTTATGGATGGGAGCATGCTTCTCACTTCAGACCTCTTCTTGTCTGAGTCTGAAGATTCCAATGGTGACTTCTTTGTTGCAAACAACTTGGAACTCTTTTATGCTAAAAGCTCATCTTCTAGTCAGAAAATCTGGGTTGATGGCTTTGTGTCAAAGGTTGTAGCCATGGCGGAGTCTTTGGCAGGAAAAGATTCAGCAACCCATGGTAGCTTAAGTTTCGTGTATGTTGTAATAAAATTATTGGAACAGAATGGTGCGAGGATTAGAAGAGTTGATGAGAATTCTTTTGCCACAAAGATTGGCTCTGGTAGTGAAACTTCTCTTCGGGATAAGAAGTTGGTATATTGGTCAAGTGAGATGGAGCTGAATTCAATTCAGAAATGGCTCGACGAGTTCAATTTGTGGAGCATAGACAGTGATTTGTCATGCACCGCGGTGGTCTGCCACAAATCCTAG >Glyma07g05080.2 sequence type=CDS gene model=Glyma07g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCCAATTATAGCCCTTCCATCTTTGGGGTTTCGCTGCAGCGAGCAAGGTAAACATGGAAACAAATTGCAGTTGGATGACCAGACACGACTTTTCCTATACCAGTTAGTTGGCACATGGGGTCAAATTCTCTTTCCAAAGCCATGGAAGGAGTTCAGACTTTGGTACGACGAGAACAAGGCAAAGGGCAATAAGCCATTTCTTGAGGGGATGGTGACCACCGGATGGTATAAGAAAATGGGAGAGAGGATTTGGACACCTTGGTTCATAAAGTTTATTCAATCCCGTGGTTATTTTAATATCTACACAAATCTTCTGCATGAGAGAGCATTAAGTGTTTCTCACAGAGATGCTGGAGTTAACTACGGGAAAACTGCTGGACCTGATTCTAAATTACTAGAGGAAAAATCTCTAGACTTCAATATATTGGAAGTGCAACCTTTGAGGAGTTTAAGATGGTATGATTTTTGTTTCAGAGAAGTACATCCTGGAAAGGTTGCCACGAACTTGGAAGAACTTGGATCATTGCTTCACTCTCTGCAGAAACAGGATAGTGTCTTCTTAGTAAATCTTTTTGGGGTATCAGATGCTATATCAAGAAACTTACTATGCCACTTTGAGAGGCTAGATATCAGGAATTATATACTTATGGGCCCTCCATCTGACTCCTTATTTGATCTGGCAAGGAGGGGACACCCTGTAATTAACGTTGACAAATTTATAAGTAGTGTTGGATTGTCTAAATTCACTTCACAAGGTTTGAGTTTTGAGACCATCAAGGGTATTCTGGCAAAGACTTATGCAATTAAGAAGTGTATTGAGAATAGGTATAACACGTGGGTTATGGATGGGAGCATGCTTCTCACTTCAGACCTCTTCTTGTCTGAGTCTGAAGATTCCAATGGTGACTTCTTTGTTGCAAACAACTTGGAACTCTTTTATGCTAAAAGCTCATCTTCTAGTCAGAAAATCTGGGTTGATGGCTTTGTGTCAAAGGTTGTAGCCATGGCGGAGTCTTTGGCAGGAAAAGATTCAGCAACCCATGGTAGCTTAAGTTTCGTGTATGTTGTAATAAAATTATTGGAACAGAATGGTGCGAGGATTAGAAGAGTTGATGAGAATTCTTTTGCCACAAAGATTGGCTCTGGTAGTGAAACTTCTCTTCGGGATAAGAAGTTGGTATATTGGTCAAGTGAGATGGAGCTGAATTCAATTCAGAAATGGCTCGACGAGTTCAATTTGTGGAGCATAGACAGTGATTTGTCATGCACCGCGGTGGTCTGCCACAAATCCTAG
>Glyma07g05080.1 sequence type=predicted peptide gene model=Glyma07g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVGPKRHFLPLILISLAAFIFYSFHHSSLPSSILESNPTSTFPNPIRTQSSPNFTFVIKVLAFNRLAALSRCLRSLAAAHYLADRVHLHLHIDHFAPDNASHVDPKLREAHQILEFVDGFDWKFGEKVVHYRTGNVGLQAQWLEAWWPSSDHEFAFVVEDDLEVSPLYYEFVKALIMNFYYNASNYSPSIFGVSLQRARFVPGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDENKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSRGYFNIYTNLLHERALSVSHRDAGVNYGKTAGPDSKLLEEKSLDFNILEVQPLRSLRWYDFCFREVHPGKVATNLEELGSLLHSLQKQDSVFLVNLFGVSDAISRNLLCHFERLDIRNYILMGPPSDSLFDLARRGHPVINVDKFISSVGLSKFTSQGLSFETIKGILAKTYAIKKCIENRYNTWVMDGSMLLTSDLFLSESEDSNGDFFVANNLELFYAKSSSSSQKIWVDGFVSKVVAMAESLAGKDSATHGSLSFVYVVIKLLEQNGARIRRVDENSFATKIGSGSETSLRDKKLVYWSSEMELNSIQKWLDEFNLWSIDSDLSCTAVVCHKS* >Glyma07g05080.2 sequence type=predicted peptide gene model=Glyma07g05080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPPIIALPSLGFRCSEQGKHGNKLQLDDQTRLFLYQLVGTWGQILFPKPWKEFRLWYDENKAKGNKPFLEGMVTTGWYKKMGERIWTPWFIKFIQSRGYFNIYTNLLHERALSVSHRDAGVNYGKTAGPDSKLLEEKSLDFNILEVQPLRSLRWYDFCFREVHPGKVATNLEELGSLLHSLQKQDSVFLVNLFGVSDAISRNLLCHFERLDIRNYILMGPPSDSLFDLARRGHPVINVDKFISSVGLSKFTSQGLSFETIKGILAKTYAIKKCIENRYNTWVMDGSMLLTSDLFLSESEDSNGDFFVANNLELFYAKSSSSSQKIWVDGFVSKVVAMAESLAGKDSATHGSLSFVYVVIKLLEQNGARIRRVDENSFATKIGSGSETSLRDKKLVYWSSEMELNSIQKWLDEFNLWSIDSDLSCTAVVCHKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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