SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G72340 | AT | Annotation by Michelle Graham. TAIR10: NagB/RpiA/CoA transferase-like superfamily protein | chr1:27236898-27238482 FORWARD LENGTH=382 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0006446 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of translational initiation | SoyBase | N/A | ISS |
| GO:0044237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metabolic process | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005851 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 2B complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0005085 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1466 | KOG | Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) | JGI | ISS | |
| PTHR10233 | Panther | TRANSLATION INITIATION FACTOR EIF-2B | JGI | ISS | |
| PTHR10233:SF7 | Panther | TRANSLATION INITIATION FACTOR EIF-2B ALPHA SUBUNIT | JGI | ISS | |
| PF01008 | PFAM | Initiation factor 2 subunit family | JGI | ISS | |
| UniRef100_G7L962 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor eIF-2B subunit alpha n=1 Tax=Medicago truncatula RepID=G7L962_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KHI7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHI7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g05070 not represented in the dataset |
Glyma07g05070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g045300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g05070.1 sequence type=CDS gene model=Glyma07g05070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAATCAGAAGGCATCGGCGTATTACGAGAACAGAGCGGTTCAGTTCGGGGTAGTGAGCACCGACTGGCTCGCTCAGGCCCAGTCCGCCACCGTCCATTCTCCTCCTCACAACAACGATGACGACGAAGAGATACCGTTCTCGGTGATATCGGAGTTCGACAGGTGGCGCAAACACCCCGATTTGGCGGAGGCCGTGGCCGCCATTCGCGCCTTGGCCGCCGTCATCCGCTCCAGCAAGGCCTCCACCATGATGCAGCTCGAAATCCAACTCAAAAACGCCTCCGATACCCTCAAATGCTGGGATACAACCTCCATCTCTCTAACCGCCGCCTGCGATCTCTTCATGCGATACGTCACCAGAACTTCCGCTTTGGAGTACGAAGACTTCAATTCCGCCAAGTCTCGCTTGCTCGAACGCGCCGAAAAGTTCGGCGAAATCTCCTTCAAGGCTCGCAAGATCATTGCAATGCTCAGTCAAGATTTTATATTCGACGGCTGCACGATTCTCGTTCACGGATTCTCCCGAGTCGTGCTTCAGATTCTCAAACTCGCCGCGCAGAATAACAAGCTCTTTCGCGTCTTCTGCACAGAGGGGAGACCGGATCGAACGGGTTTGAGGTTGTCAAATGAGCTGGCCAAGCTTGATGTTCCGGTGAAGCTTGTTATAGACTCTGCGGTGGCGTATACCATGGATGAGGTTGACATGGTGTTTGTTGGGGCGGATGGAGTTGTTGAAAGTGGTGGCATAATCAACATGATGGGGACTTACCAAATCTCATTGGTTGCTAAGAGTATGAGCAAGCCTGTTTATGTGGCTGCTGAAAGCTACAAGTTTGCTCGACTTTACCCTCTGGACCAAAAGGATTTGGCTCCTGCCTTGCGACCAGTTGATTTTGGTGTGCCTATTCCATCCAAGGTTGAGGTTGAATGTTCTGCGCGGGATTATACTCCTCCTCAATATCTCACTCTGCTTTTCACAGATTTAGGTGTTCTTACTCCATCAGTTGTTAGTGATGAACTCATCCAGCTATACTTGTAG
>Glyma07g05070.1 sequence type=predicted peptide gene model=Glyma07g05070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENQKASAYYENRAVQFGVVSTDWLAQAQSATVHSPPHNNDDDEEIPFSVISEFDRWRKHPDLAEAVAAIRALAAVIRSSKASTMMQLEIQLKNASDTLKCWDTTSISLTAACDLFMRYVTRTSALEYEDFNSAKSRLLERAEKFGEISFKARKIIAMLSQDFIFDGCTILVHGFSRVVLQILKLAAQNNKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQISLVAKSMSKPVYVAAESYKFARLYPLDQKDLAPALRPVDFGVPIPSKVEVECSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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