Glyma07g04950 - SoyBase

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Report for Sequence Feature Glyma07g04950

Feature Type:	gene_model
Chromosome:	Gm07
Start:	3661856
stop:	3665405
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g04950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53910	AT	Annotation by Michelle Graham. TAIR10: related to AP2 12 \| chr1:20135242-20136581 FORWARD LENGTH=358	SoyBase	E_val: 4.00E-55	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0070483	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of hypoxia	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_H2D4C4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ethylene-responsive transcription factor 7 n=2 Tax=Glycine max RepID=H2D4C4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_H2D4C4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor 7 n=2 Tax=Glycine max RepID=H2D4C4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g04950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g04950 not represented in the dataset	Glyma07g04950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g04950

Paralog	Evidence	Comments
Glyma16g01500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g04950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g044300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g04950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g04950

Limit To All Plant Sequences

>Glyma07g04950.6   sequence type=transcript   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATAAATACCATACAGCTCGCACCTTACACCAAACTCAATTATACAAAACCCTGAAGAAAGACACAGCCATTGTTTGTTTACTTTCCATTGATTGAGCGAAAGCTTTGTTTTTTCTGCGATCATTTTCCATTGGGTGGAAGAAAGTCTCAACCTTTAGTCGAAAGAGCAAGGATCTGAGTGAGTGAGCGATCATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGAACACCTTCATATCCCTTTTTATGTAAATAAAGCTACAAGAATTGTGATCGTGATGTTGGTGATGGAATCCACAGCAAGAAAACCAACCTGCTTAAAGCATATGTGGAGTTTATTTATCTTGTAGCTAATGCAGTATAGGACTATATATAGGTTTTTATAGGGTATCCTTTGTGTGAAACTCAAGAGACCTCGTTTTCAGGGGATTTTCTGTTTGATGTCCATAAGGATTATCAATTATGTTATATATGGTCTGGGATACAGTCTTGACTTACAGTTTTTAACTTGGTTGTTTTCATTGTTATGGCAATTTGATTATGATTTGAGACCAGCCATTTTTCAATGCTTTGTGTGGTGGATGATTGCATATCGCCTCTATTATTTTGCTTACTGGTTACTCAGGCCATCTTTAATAGATCGTCCTTGGTGTAAAGTTTTAGCTATTAATGGATGTGGAAAAG

>Glyma07g04950.7   sequence type=transcript   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATATAAATACCATACAGCTCGCACCTTACACCAAACTCAATTATACAAAACCCTGAAGAAAGACACAGCCATTGTTTGTTTACTTTCCATTGATTGAGCGAAAGCTTTGTTTTTTCTGCGATCATTTTCCATTGGGTGGAAGAAAGTCTCAACCTTTAGTCGAAAGAGCAAGGATCTGAGTGAGTGAGCGATCATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGAACACCTTCATATCCCTTTTTATGTAAATAAAGCTACAAGTTAGTGATTTTTCATTCTGCCTCTAGTTTCTTTAATTTTTGCTTCTGTTCTCTTCTTAGTGGAAGCATCCCTGCATGTTTCTGAATGTATATTATTTATCATTATAATTTTCATTTGTGTATTGCTTTCAGGAATTGTGATCGTGATGTTGGTGATGGAATCCACAGCAAGAAAACCAACCTGCTTAAAGCATATGTGGAGTTTATTTATCTTGTAGCTAATGCAGTATAGGACTATATATAGGTTTTTATAGGGTATCCTTTGTGTGAAACTCAAGAGACCTCGTTTTCAGGGGATTTTCTGTTTGATGTCCATAAGGATTATCAATTATGTTATATATGGTCTGGGATACAGTCTTGACTTACAGTTTTTAACTTGGTTGTTTTCATTGTTATGGCAATTTGATTATGATTTGAGACCAGCCATTTTTCAATGCTTTGTGTGGTGGATGATTGCATATCGCCTCTATTATTTTGCTTACTGGTTACTCAGGCCATCTTTAATAGATCGTCCTTGGTGTAAAGTTTTAGCTATTAATGGATGTGGAAAAG

Coding sequences of Glyma07g04950

Limit To All Plant Sequences

>Glyma07g04950.5   sequence type=CDS   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGA

>Glyma07g04950.6   sequence type=CDS   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGA

>Glyma07g04950.7   sequence type=CDS   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTGGTGGTGCGATTATCTCCGACTTCATTCCAGCGGGTCCCGCCGGCGGGGCGCAGCGCGTGACCGCCGACATCCTGTGGCCGAATTTGAGGAAGCGGTTCTCGAAGTCGCTGCTGGACGATGATTTCGAGGCAGGGTTCAGAGAATTCGAGGATGACTCGGAAATCGAGGATGTCGATGATGAGGACGATGAAGAGGAGGAGGAGTTGAAGAAGAAGAAGCCCTTTGGGTTCTCTCGCTCCAACAACAAGGCTGCTTCTAAGCCTCTCTCTCGTGGAGCAACAACTGTGAAATCTGTGGAATCAAAGGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAGTATCGCGGAATCCGCCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATTCGCGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTACGATGCTGAAGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGGCGCTGCTTCCTCAAAACGTCTCAAGGCGAATCCAGAGGCTCAGCCAATGAAGAAAAATCTGAACTCTGTGAAGCCGAAAATAAACCAGATGTTCAATTTTGGTGACAATCTTGAGGGCTACTACAGCCCTATAGATCAGGTGGAACAGAAACCACTGGTTAACCAGTATGTTAACCGTGCCCCGTTTGCTGGAAATGGAGTTCAAGTCTCACCTGTTACTCCATCTGCTGATGTTACTGCTTACTTCAGCTCTGAGCATTCGAGCAGCTCGTTTGATTATTCTGACCTCGGATGGGGTGAACAAGTCCCCAAGACACCCGAGATCTCATCCATGCTTTCTGCTGCTCCTTTGGACGGTGAATCTCAGTTTGTGCAGGGTGCTGCTGATCAGAATCAGAAGAAGAACAACCTGCTGGATATGGCATCTGTGCAAGATGATTCTGCAAAAACTCTTTCTGAGGAGCTTGCAGACATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTCTTTTCTTGATGAAGCCTGGGCTGATGCTGCATTGGCGTCTTTGCTCAGTGAAGATGCATCTCAGGATGCTGCTGGAAACCCTATGAACCTTTGGAGCTTCGACGACCTGCCTTCCATGGCAGGAGTCTTCTGA

Predicted protein sequences of Glyma07g04950

Limit To All Plant Sequences

>Glyma07g04950.5   sequence type=predicted peptide   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFIPAGPAGGAQRVTADILWPNLRKRFSKSLLDDDFEAGFREFEDDSEIEDVDDEDDEEEEELKKKKPFGFSRSNNKAASKPLSRGATTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGAASSKRLKANPEAQPMKKNLNSVKPKINQMFNFGDNLEGYYSPIDQVEQKPLVNQYVNRAPFAGNGVQVSPVTPSADVTAYFSSEHSSSSFDYSDLGWGEQVPKTPEISSMLSAAPLDGESQFVQGAADQNQKKNNLLDMASVQDDSAKTLSEELADIESQLKFFETPSFLDEAWADAALASLLSEDASQDAAGNPMNLWSFDDLPSMAGVF*

>Glyma07g04950.6   sequence type=predicted peptide   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFIPAGPAGGAQRVTADILWPNLRKRFSKSLLDDDFEAGFREFEDDSEIEDVDDEDDEEEEELKKKKPFGFSRSNNKAASKPLSRGATTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGAASSKRLKANPEAQPMKKNLNSVKPKINQMFNFGDNLEGYYSPIDQVEQKPLVNQYVNRAPFAGNGVQVSPVTPSADVTAYFSSEHSSSSFDYSDLGWGEQVPKTPEISSMLSAAPLDGESQFVQGAADQNQKKNNLLDMASVQDDSAKTLSEELADIESQLKFFETPSFLDEAWADAALASLLSEDASQDAAGNPMNLWSFDDLPSMAGVF*

>Glyma07g04950.7   sequence type=predicted peptide   gene model=Glyma07g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCGGAIISDFIPAGPAGGAQRVTADILWPNLRKRFSKSLLDDDFEAGFREFEDDSEIEDVDDEDDEEEEELKKKKPFGFSRSNNKAASKPLSRGATTVKSVESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSGAASSKRLKANPEAQPMKKNLNSVKPKINQMFNFGDNLEGYYSPIDQVEQKPLVNQYVNRAPFAGNGVQVSPVTPSADVTAYFSSEHSSSSFDYSDLGWGEQVPKTPEISSMLSAAPLDGESQFVQGAADQNQKKNNLLDMASVQDDSAKTLSEELADIESQLKFFETPSFLDEAWADAALASLLSEDASQDAAGNPMNLWSFDDLPSMAGVF*

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