SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23710 | AT | Annotation by Michelle Graham. TAIR10: DNA binding;DNA-directed RNA polymerases | chr5:7996528-7997220 REVERSE LENGTH=230 | SoyBase | E_val: 2.00E-56 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG3233 | KOG | RNA polymerase III, subunit C34 | JGI | ISS | |
| PTHR12780 | Panther | RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED | JGI | ISS | |
| PF05158 | PFAM | RNA polymerase Rpc34 subunit | JGI | ISS | |
| UniRef100_E6NUB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: JHL06P13.1 protein n=1 Tax=Jatropha curcas RepID=E6NUB2_9ROSI | SoyBase | E_val: 6.00E-83 | ISS |
| UniRef100_I1KHE5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KHE5_SOYBN | SoyBase | E_val: 7.00E-166 | ISS |
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Glyma07g04660 not represented in the dataset |
Glyma07g04660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g041800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g04660.3 sequence type=transcript gene model=Glyma07g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCATGTGCCTCTCTCCTTTTCCCCCAAAATCTGCTTCAGTTCACGTTCACGCTTCGCTACCTGCGCCTATTCATTGTCTCTTCTCTTCCCCTGCTCAACGTTTTTCTTCTCCCTTCCCCCACCCACCTCCACTCTTTTCATTTCTATTCTCTTCCCAAACAGAACGACCATCGGAACAAACGGCATTTTGTCAAACAGTTACGAGATTGCAATTGCACCAAGGGGACAAAACAAAACAATGAGCAGCGTTTTGCAAGGGAAACGCAAGCGCCAGGACTTGGCTTCAAGGCTCTCGGCCTCAATGAATAATGAGGAGGGTCGTGTCTACAACATCATTCGCGGGAGGAAGGAGATGGGGATATGGCAAGGGGACATCAAACGAGAAGCCAACATCCCCGATAGTTTGTTGAAGAAATCCATCAAGATGCTTATCACCAAGAAACTCGTCAAGGAGGTTGTGAACGTGCAGAACAGGTCCAAGAAGTTGTTGATGGCATCGGATTTCGAACCCTCCAATGAGATCAGTGGTGGAGAGTGGTACACCGAAGGCAAACTCGACACAGAATTTATTGACAAGCTGTCTGAGGCTTGCTTTAGTAGTATTCGTCGCCTGAAGGTCGCGACTTGTGAGGGCATCCTTGAGTGGATTAGGAAGGCGGGTGGTGGAGTCAGTAAAGGGCAGATGGAGCAGATTTTGAAGAAGTTGGTTATGGAGAATAAGGTGCAGGAAGTGACTAGTGATGGCTCTGGGGATTTTGAGTCTGTTCCTGTTGGTGAAGTTTGTTATAGATTGGTGAAGAAGGCTGCTGGTGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTAATTCTTGTACACCCGATGGTGTTATCTCCCCTACAACTTGTCAATATTATCAGAAATGGTTGGACTTCTAAATGTGTCCCATTCAAATCCAAGTCCTTTTTTAGTTTGGGATTTTACATACCTTTTAGTTTTGAATTCCATCTTTTTTATTTTTTTATTTTTCATATGGCACTTTCTAGAGTCTTTATTGATTTTCTGTTCAATGTGATACTTAAAAGAATTAATTGATTTTCCTTTTGCATTTAAGAGAAAGCTTTTTGGTGTGAATTTCTTGCATTACTTGTTAATGATAAATTAAGAACAAGTGGAGAACAACTCCAAGGGCAGAAATCTTGATGTCAAAAAAAGAATGGCATCAACATTTTGATATGTTTAAGCTAATGTGACAAGGATCAAGGAATGCTTTTTGTTATATGATTATAGTACGTAGTAGTACCTTTGTTGCACAAGGTGAAATGCTTAGATCAGACAATGGAGAAAGGGTTTAATTATATTTTGTTAGTTTGTGTCTTTGTCTGGTATTATTCAACTATTTAATAGCGCTGAGGCAACTGTTGTTAGGCAAGAATTTGCTAAGCTAAAAAAAAGGCACATATAATTTAGTACTGGTTATGGTGGAGAGAGGAGGAGTTTGGCAAGCTTTCATATGCTGCCTGAGGCCAAGCGTGCCTTGGAGGTTTCACTGAAATGTTGATATCCAAGCTTAACCTTTGTCCTGTACTGTGTATCTGTGGAGTGTGCTCATACACTTGAAATATACAGAACTTCAGATTGCATTTGAAGCCACATTTGGTAGGAAGACAATCATGGTGAATGGTGAGATTGCTGAAAAGAAGTTATTAACTGGAAGTTCGTTGGACATTGCATACAATGGGAATCTTCATGCCAAAAGAGCAGTGGATGTGTGTTTATCAACAGTTTCAATGCGGGGTACTGTTTTTGGGACATCAAGTTTCTTGGTTAATTGGTCACTACTCTTTCAACTCTCGCCTATTTGTGGTTCGTCATGCTTTGATTTTTAGACTCACACAAATGGTTTTCTGCTGATTAATATATATGAAATGCTGTATGATTCCGAGTCAGAACTTTGTAATTAGCAGATATTCACTAAAAAAGTGTTTTAAGTGTTTCTGTTTCACTGTGATAATCAATACCAAAAAAACAGAGAAGGAACAATACTAGCTAGACTACTAGTATACTCGAGT
>Glyma07g04660.2 sequence type=CDS gene model=Glyma07g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGCGTTTTGCAAGGGAAACGCAAGCGCCAGGACTTGGCTTCAAGGCTCTCGGCCTCAATGAATAATGAGGAGGGTCGTGTCTACAACATCATTCGCGGGAGGAAGGAGATGGGGATATGGCAAGGGGACATCAAACGAGAAGCCAACATCCCCGATAGTTTGTTGAAGAAATCCATCAAGATGCTTATCACCAAGAAACTCGTCAAGGAGGTTGTGAACGTGCAGAACAGGTCCAAGAAGTTGTTGATGGCATCGGATTTCGAACCCTCCAATGAGATCAGTGGTGGAGAGTGGTACACCGAAGGCAAACTCGACACAGAATTTATTGACAAGCTGTCTGAGGCTTGCTTTAGTAGTATTCGTCGCCTGAAGGTCGCGACTTGTGAGGGCATCCTTGAGTGGATTAGGAAGGCGGGTGGTGGAGTCAGTAAAGGGCAGATGGAGCAGATTTTGAAGAAGTTGGTTATGGAGAATAAGGTGCAGGAAGTGACTAGTGATGGCTCTGGGGATTTTGAGTCTGTTCCTGTTGGTGAAGTTTGTTATAGATTGGTGAAGAAGGCTGCTGGTGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTAATTCTTGTACACCCGATGGTGTTATCTCCCCTACAACTTGTCAATATTATCAGAAATGGTTGGACTTCTAA >Glyma07g04660.3 sequence type=CDS gene model=Glyma07g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGCGTTTTGCAAGGGAAACGCAAGCGCCAGGACTTGGCTTCAAGGCTCTCGGCCTCAATGAATAATGAGGAGGGTCGTGTCTACAACATCATTCGCGGGAGGAAGGAGATGGGGATATGGCAAGGGGACATCAAACGAGAAGCCAACATCCCCGATAGTTTGTTGAAGAAATCCATCAAGATGCTTATCACCAAGAAACTCGTCAAGGAGGTTGTGAACGTGCAGAACAGGTCCAAGAAGTTGTTGATGGCATCGGATTTCGAACCCTCCAATGAGATCAGTGGTGGAGAGTGGTACACCGAAGGCAAACTCGACACAGAATTTATTGACAAGCTGTCTGAGGCTTGCTTTAGTAGTATTCGTCGCCTGAAGGTCGCGACTTGTGAGGGCATCCTTGAGTGGATTAGGAAGGCGGGTGGTGGAGTCAGTAAAGGGCAGATGGAGCAGATTTTGAAGAAGTTGGTTATGGAGAATAAGGTGCAGGAAGTGACTAGTGATGGCTCTGGGGATTTTGAGTCTGTTCCTGTTGGTGAAGTTTGTTATAGATTGGTGAAGAAGGCTGCTGGTGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTAATTCTTGTACACCCGATGGTGTTATCTCCCCTACAACTTGTCAATATTATCAGAAATGGTTGGACTTCTAA
>Glyma07g04660.2 sequence type=predicted peptide gene model=Glyma07g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSVLQGKRKRQDLASRLSASMNNEEGRVYNIIRGRKEMGIWQGDIKREANIPDSLLKKSIKMLITKKLVKEVVNVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSIRRLKVATCEGILEWIRKAGGGVSKGQMEQILKKLVMENKVQEVTSDGSGDFESVPVGEVCYRLVKKAAGVGAMASIPCGVCPRINSCTPDGVISPTTCQYYQKWLDF* >Glyma07g04660.3 sequence type=predicted peptide gene model=Glyma07g04660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSVLQGKRKRQDLASRLSASMNNEEGRVYNIIRGRKEMGIWQGDIKREANIPDSLLKKSIKMLITKKLVKEVVNVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSIRRLKVATCEGILEWIRKAGGGVSKGQMEQILKKLVMENKVQEVTSDGSGDFESVPVGEVCYRLVKKAAGVGAMASIPCGVCPRINSCTPDGVISPTTCQYYQKWLDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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