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Report for Sequence Feature Glyma07g04580

Feature Type:gene_model
Chromosome:Gm07
Start:3374297
stop:3377390
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g04580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14080AT Annotation by Michelle Graham. TAIR10: Small nuclear ribonucleoprotein family protein | chr3:4667717-4668989 FORWARD LENGTH=128 SoyBaseE_val: 7.00E-82ISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005732GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small nucleolar ribonucleoprotein complex SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1782 KOG Small Nuclear ribonucleoprotein splicing factor JGI ISS
PTHR15588Panther LSM1 JGI ISS
PF01423PFAM LSM domain JGI ISS
UniRef100_B9T3A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lsm1, putative n=1 Tax=Ricinus communis RepID=B9T3A8_RICCO SoyBaseE_val: 2.00E-81ISS
UniRef100_C6SZ12UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ12_SOYBN SoyBaseE_val: 5.00E-87ISS

Expression Patterns of Glyma07g04580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g04580 not represented in the dataset
Glyma07g04580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g04580
ParalogEvidenceComments
Glyma16g01160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g04580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g040900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g04580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g04580
>Glyma07g04580.1   sequence type=CDS   gene model=Glyma07g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCTACTTCACTTGCCAGCTATCTTGACAAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGAACACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCTTGTGAGAGGGTTATTGTTGGTGATCTATACTGTGACATCCCTTTAGGTCTTTATGTGATCCGGGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCCGAACATATGACACGTGTTTCTACCGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAAGCTTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGACTAA
Predicted protein sequences of Glyma07g04580
>Glyma07g04580.1   sequence type=predicted peptide   gene model=Glyma07g04580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD*






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