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Report for Sequence Feature Glyma07g04560

Feature Type:gene_model
Chromosome:Gm07
Start:3361104
stop:3364408
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17410AT Annotation by Michelle Graham. TAIR10: Nucleoside diphosphate kinase family protein | chr1:5968627-5969444 REVERSE LENGTH=144 SoyBaseE_val: 1.00E-49ISS
GO:0006165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleoside diphosphate phosphorylation SoyBaseN/AISS
GO:0006183GO-bp Annotation by Michelle Graham. GO Biological Process: GTP biosynthetic process SoyBaseN/AISS
GO:0006228GO-bp Annotation by Michelle Graham. GO Biological Process: UTP biosynthetic process SoyBaseN/AISS
GO:0006241GO-bp Annotation by Michelle Graham. GO Biological Process: CTP biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009218GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide metabolic process SoyBaseN/AISS
GO:0019690GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine deoxyribonucleoside interconversion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004550GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside diphosphate kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR11349Panther NUCLEOSIDE DIPHOSPHATE KINASE JGI ISS
PF00334PFAM Nucleoside diphosphate kinase JGI ISS
UniRef100_I1KHD6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleoside diphosphate kinase n=1 Tax=Glycine max RepID=I1KHD6_SOYBN SoyBaseE_val: 5.00E-78ISS
UniRef100_I1KHD6UniRef Annotation by Michelle Graham. Best UniRef hit: Nucleoside diphosphate kinase n=1 Tax=Glycine max RepID=I1KHD6_SOYBN SoyBaseE_val: 5.00E-78ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g04560 not represented in the dataset

Glyma07g04560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma16g01140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g040700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g04560.1   sequence type=CDS   gene model=Glyma07g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAGAATTTAAAAGGAAAAAGATGGTTCAACTTGATGAGGCCACTGTGAAATTTTTTTATGCTGAGCACTCTTCAAAAAGCTTCTTTTCAAGCCTTATAAAATACATGACAAGTGGACCAGTGTTAGTTATGGTCTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCTTTAATGGGCCCTACTGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATCTGGATTGGATGTGGAAAAGAATTGTGTTCATGGTTCAGACTCTCCCAAGTCTGCGCAAAGAGAGATACCATTTTTCTTCAAAGAGCTCTCTGCAGATGTGATTGCAGAGCATGATGAATTGTAG

>Glyma07g04560.1   sequence type=predicted peptide   gene model=Glyma07g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSEFKRKKMVQLDEATVKFFYAEHSSKSFFSSLIKYMTSGPVLVMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKSGLDVEKNCVHGSDSPKSAQREIPFFFKELSADVIAEHDEL*







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