SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G17420 | AT | Annotation by Michelle Graham. TAIR10: lipoxygenase 3 | chr1:5977512-5981384 FORWARD LENGTH=919 | SoyBase | E_val: 0 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009644 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to high light intensity | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009901 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther dehiscence | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0034440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid oxidation | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0080086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen filament development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016165 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipoxygenase activity | SoyBase | N/A | ISS |
| PTHR11771 | Panther | LIPOXYGENASE | JGI | ISS | |
| PTHR11771:SF2 | Panther | LIPOXYGENASE | JGI | ISS | |
| PF00305 | PFAM | Lipoxygenase | JGI | ISS | |
| PF01477 | PFAM | PLAT/LH2 domain | JGI | ISS | |
| UniRef100_I1KHC6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1KHC6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KHC6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Lipoxygenase n=1 Tax=Glycine max RepID=I1KHC6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g04480 not represented in the dataset |
Glyma07g04480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma16g01070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g039900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g04480.1 sequence type=CDS gene model=Glyma07g04480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCTTACAAAACAAATCTTGGGTTCTTCATTGCTAGAGAGGTCCATGTTTGTTCCTTCTTCTTCCCCTTCATCACTTCTCAACCAAACTCGGTTCTTAGTTCCTTTGGAGAACAAGAGAGTTGTGAGGGTGAAGAGAGCTGCAAAGTTTCCTGTGGCAGCTATAAGTGAGGATTTGATGAAGGGTTCTTCTTCTTCTCCTTCATCATCATCATCTTCATCCTCTTCTTCTTCTTCTTCTTCTGTGTCCACAGAAAAACCAGTGAAATTCAAGGTTAGAGCTGTGATCACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACCATCGTGAAGCATATTGATGCTCTTACTGACAGGATTGGAAGGAATGTTGTCCTTGAACTTGTTAGCACTGAGATTGATCCAAAGACCAAATCTGCAAAGAAAAGTAATGAAGCAGTGCTGAAGGATTGGTCAAAGAAGTCCAATCTTAAGGCAGAGAGAGTTAATTACACGGCTGAATTCATAATTGACTCTAGTTTTGGGGAGCCAGGAGCTATTACTGTGACAAACAAACACCAGAAAGAGTTCTTCTTGGATAGCATAACCATTGAAGGATTTGCAAGTGGACCAGTTCATTTCCCCTGCAATTCATGGGTACAATCAAGAAAAGATCTTCCTGGAAAGAGGATTTTCTTTTCCAATAAGCCATATTTACCCGGGGATACACCTGCTGGGCTTAGATTATTGAGGGAGAAAGAGCTGAGAAATCTCAGAGGTGATGGCAAAGGAGTTAGAAACTTATCTGACAGAATATATGACTATGATATATACAATGATTTGGGAAATCCAGATAAAGGAATTGAACTTGCCAGGCCAAATCTTGGAGGATCAGATATGTATCCATACCCAAGACGGTGTCGTACTGGCCGCGAACCAAGTGATACAGATATGTACGCAGAGAGTCGTGTGGAGAAGCCATTGCCTATGTATGTGCCAAGAGATGAACGTTTTGAGGAGTCTAAGCAGAACACATTCACTGTGAAGAGGCTCAAGGCAGTGCTGCATAACTTGATCCCAGGTCTTAAGGCTAGCCTTTCTTCTAGCAACCAAGACTTCAATGAATTCTCAGATGTTGATGGCCTTTACAGTGAAGGGTTGCTCATAAAGTTGGGGTGGGGGTTGCAAGATGACGTGTTGAAGAAAATTCCATTTGTCAGCAAAATCCAAGAGTCCAGCCAGGGTCTTCTTAAGTATGACACTCCTAAGATCATTTCCAAGGACAAATTTGCGTGGTTGCGAGATGACGAATTTGCCCGCCAAGCAATAGCAGGAGTTAACCCTGTTAACATTGAGAAGCTTCAAGTTTTCCCACCAGTTAGCAAACTAGACCCAGAAATTTATGGCCCCCAAGAGTCTGCTCTTAAAGAAGAACATATTTTGAATCAACTCAATGGCATGACTGTCCAAGAGGCAATAAACGAAAATAAGCTGTTTATGATTGATTATCATGATATATATCTACCTTTCTTAGAAGGGATCAATGCCCTTGATGGTAGGAAATCATATGCCACACGCACCATCTTTTTCTTGACACCACGTGGCACTCTCAAGCCTGTGGCTATAGAACTTAGCCTCCCTCATGCTGGACCTAATTCCCGGTCAAAGCGCGTGGTTACACCTCCTGTTGATGCTACTACTAATTGGATGTGGCAGCTTGCCAAGGCCCATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTTAACCATTGGTTACGTACACATGCCAACTTGGAACCATTTATATTGGCGGCTCATAGGCAATTAAGTGCTATGCATCCAATTTTCAAGTTGTTGGACCCCCACATGAGGTACACCTTGGAGATCAATGCCTTGGCTAGACAGAGTTTGATCAATGCTGATGGAATCATTGAAAATTGCTTTACTCCTGGTCGCTATGCCATGGAGATTAGTTCTGCTGCCTACAAGAACTTTTGGCGCTTTGACATGGATAGCCTCCCTGCAGATCTCATCCGCAGGGGAATGGCCGTACCTGACCCAACACAGCCACATGGTCTAAAGCTCATATTGGAAGACTACCCTTATGCAGCTGATGGAATACTAATCTGGTCTGCAATAGAAGACTGGGTTCGAACCTATGTGAACCATTACTACCCTCACTCAAGCCTTATATGCAATGACAAAGAGTTACAATCTTGGTACTCTGAGTCAATCAATGTAGGCCATGCTGATCTCAGGCATGAAAGTTGGTGGCCAACATTGAACAATAGTGAGGATCTTGTGTCCATTCTTTCCACATTGATTTGGAATGCATCTGCACAACATGCTGCTCTCAACTTTGGCCAGTACCCTTATGGTGGCTATGTGCCTAATCGTCCACCACTGATGAGAAGGTTAATACCAGAAGAGGGTGATCCAGAATATGCAAGTTTCCATGCTGACCCTCAGAAGTATTTTCTGAATGCATTGCCTAGCTTGCTGCAAGCCACAAAGTTCATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGGGAGAGGCAACAACCTTCAATTTGGTCTGGAGACGCCGAGATCGTCGAGGCGTTCTACGATTTCTCCGCCAAGGTTCGACAGATAGAGAAGGTCATTGATAGCAGGAACCTTGATCGGACTCTAAGGAACCGTTGTGGTGCAGGGGTGTTGCCATATGAGTTGCTTGCTCCTAGCTCTGAACCTGGCGTTACATGCAGAGGGGTGCCCAATAGTGTGTCCACATAA
>Glyma07g04480.1 sequence type=predicted peptide gene model=Glyma07g04480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALTKQILGSSLLERSMFVPSSSPSSLLNQTRFLVPLENKRVVRVKRAAKFPVAAISEDLMKGSSSSPSSSSSSSSSSSSSSVSTEKPVKFKVRAVITVRNKIKEDFKETIVKHIDALTDRIGRNVVLELVSTEIDPKTKSAKKSNEAVLKDWSKKSNLKAERVNYTAEFIIDSSFGEPGAITVTNKHQKEFFLDSITIEGFASGPVHFPCNSWVQSRKDLPGKRIFFSNKPYLPGDTPAGLRLLREKELRNLRGDGKGVRNLSDRIYDYDIYNDLGNPDKGIELARPNLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPLPMYVPRDERFEESKQNTFTVKRLKAVLHNLIPGLKASLSSSNQDFNEFSDVDGLYSEGLLIKLGWGLQDDVLKKIPFVSKIQESSQGLLKYDTPKIISKDKFAWLRDDEFARQAIAGVNPVNIEKLQVFPPVSKLDPEIYGPQESALKEEHILNQLNGMTVQEAINENKLFMIDYHDIYLPFLEGINALDGRKSYATRTIFFLTPRGTLKPVAIELSLPHAGPNSRSKRVVTPPVDATTNWMWQLAKAHVCSNDAGVHQLVNHWLRTHANLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQSLINADGIIENCFTPGRYAMEISSAAYKNFWRFDMDSLPADLIRRGMAVPDPTQPHGLKLILEDYPYAADGILIWSAIEDWVRTYVNHYYPHSSLICNDKELQSWYSESINVGHADLRHESWWPTLNNSEDLVSILSTLIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEEGDPEYASFHADPQKYFLNALPSLLQATKFMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIVEAFYDFSAKVRQIEKVIDSRNLDRTLRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVST*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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