Report for Sequence Feature Glyma07g03870
Feature Type: gene_model
Chromosome: Gm07
Start: 2714396
stop: 2718668
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g03870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G52420 AT
Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr1:19528667-19531035 FORWARD LENGTH=670
SoyBase E_val: 0 ISS
GO:0001666 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to hypoxia
SoyBase N/A ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0019375 GO-bp
Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG0853
KOG
Glycosyltransferase
JGI ISS
PTHR12526 Panther
GLYCOSYLTRANSFERASE
JGI ISS
PTHR12526:SF41 Panther
GLYCOSYLTRANSFERASE
JGI ISS
PF00534 PFAM
Glycosyl transferases group 1
JGI ISS
UniRef100_B9SQA7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SQA7_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1KH63 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KH63_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g03870
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g03870
Paralog Evidence Comments
Glyma08g22160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g03870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g034500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g03870
Coding sequences of Glyma07g03870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g03870.1 sequence type=CDS gene model=Glyma07g03870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGATTGCAACAACAAAGGAGAAGTTCATGTGCATTTAACTAAGCAGAAGCAGTCTTCATCAAGATCAGGTATCAGTTTGAAAGCTGCGTTATCTGGAAGATCATCTCCACAACATTTTCCTTCATTTCAGCGACCATATTCTACCTTGACACCAAGAAGAGAAAGCAAGGGTGATGCACAGTGCTATGGTAGCAACCGGTTACTGTTGTGGCTGCTTCTGATTACCCTTTGGGCTTATCTTGGATTTTATGTTCAGTCAAGGTGGGCACATGATGATAAGGAAGAAGAATTTTCAGGCTTTGGAAGCAGGCAAAGTGATACAACAAACTCTTACGTTGGACAGAATCAGCATCTTGATTTGATTGCCAAGAACATTTCCTTATCTGTAAATATTGAATTAGTTGAGAACAAAACAGTTGATGTGGCTTTGGCCAAGAAAGAATACGGTGTTCTATCTCAACTTAAGGCTAGCTCAAAGAAAAGGAACAGAAGAAAGCGATCAACGCATGCTTTGCGAGGTACGAGGAGGCGAAAACATATACTTGAGAGCAGTGATATAGAGGAGCAAGAGCCAGAAATTCCCCTCAGGAATGATACCTATGGATTCCTTGTTGGTCCATTTGGTTCGATAGAGGATAGAATTCTGCAATGGAGTCCTCAGAGGCGTTATGAAACCTGTGATAAGAAGGGGGAATTCGCACGCCTTGTTTGGTCAAGAAGGTTTGTTTTGATATTTCATGAGCTTTCCATGACTGGTGCTCCACTTTCAATGATGGAGTTGGCAACTGAACTCTTGAGTTGTGGAGCTTCTGTTTCAGCTGTGGTGCTTAGCAGGAAGGGTGGTTTGATGCAAGAACTTGCTAGGAGACGAATCAAGGTGCTTGATGACAAGGCATATCTCAGCTTCAAAATTGCAAACAAGGCAGATCTTGTCATTGCTGGATCAGCTGTCTGTACATCATGGATTGAACAATACATTGAACATTTTCCCGCTGGTGCAAATCAAGTTGCTTGGTGGATTATGGAAAACCGACGAGAGTACTTTGATCGGGCAAAGGATGTGTTGCAGAGAGTGAATACATTGGTTTTTCTGTCTGAATCACAATCTAGGCAATGGCAAAAATGGTGTGTAGAAGAAGGCATAAAACTGAGCTCTCAGCTTGCACTCGTCCCATTGTCTGTTAATGATGAACTAGCTTTTGTAGCTGGCATTCCCTCTACACTTAAAGTTCCATCCTTCAGTGCTGCAAAAATGGATGAGAGAAGGAAGTTGTTGCGAGATTCTATCCGAAGAGAAATGGGATTGAATGATAATGATATACTTGTTATGACTCTCAGTAGCATCAACCGTGGGAAGGGTCAGCTATTGCTTCTTGAATCAGCACGCTCAATGGTAGAACATGGACCATTGCAACAAGATGATAAGAAAATACCGGAGTCATCAGATGATGGAGAATACCTATCTACCTTGGCTAGAAGACATCATATTAGAAATTTGTTGAAGGATAACAGTGTAGCCTTGAACAATATCTCAAGCAATTTTATAAACAGAACAAGGGAAGTGTTGTCCCAAAACAATGGAACAATGGCACAATCTCTCAAAATTCTCATTGGTTCTGTGGGATCTAAGAGTAACAAGGTGGATTATGTTAAAGGTCTTCTAAGTTTCTTAGCACGGCATTCAAACTTGTCAAAGTCAGTTTTGTGGACCTCAGCCACAACACGTGTTGCCTCACTTTACTCTGCAGCAGATGTTTATGCCATAAACTCTCAGGGATTGGGAGAAACATTTGGACGGGTGACTATAGAAGCCATGGCATTTGGTCTTCCGGTGCTTGGAACAGATGCTGGGGGAACACAAGAAATTGTTGAGCATAATGTGACAGGTCTTCTTCATCCTATTGGACGTGCAGGGAATCGTGTCCTTGCACAGAATCTCCGGTTTTTACTTGAAAACAGGTTGGCAAGAGAGCAAATGGGGATGGAAGGAAGAAAAAAGGTGCAGAGGATGTTCTTGAAGCAGCACATGTATGAGAAACTTGTAGAGGTTCTTGTCAAGTGCATGAGAAGGATATAA
Predicted protein sequences of Glyma07g03870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g03870.1 sequence type=predicted peptide gene model=Glyma07g03870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDCNNKGEVHVHLTKQKQSSSRSGISLKAALSGRSSPQHFPSFQRPYSTLTPRRESKGDAQCYGSNRLLLWLLLITLWAYLGFYVQSRWAHDDKEEEFSGFGSRQSDTTNSYVGQNQHLDLIAKNISLSVNIELVENKTVDVALAKKEYGVLSQLKASSKKRNRRKRSTHALRGTRRRKHILESSDIEEQEPEIPLRNDTYGFLVGPFGSIEDRILQWSPQRRYETCDKKGEFARLVWSRRFVLIFHELSMTGAPLSMMELATELLSCGASVSAVVLSRKGGLMQELARRRIKVLDDKAYLSFKIANKADLVIAGSAVCTSWIEQYIEHFPAGANQVAWWIMENRREYFDRAKDVLQRVNTLVFLSESQSRQWQKWCVEEGIKLSSQLALVPLSVNDELAFVAGIPSTLKVPSFSAAKMDERRKLLRDSIRREMGLNDNDILVMTLSSINRGKGQLLLLESARSMVEHGPLQQDDKKIPESSDDGEYLSTLARRHHIRNLLKDNSVALNNISSNFINRTREVLSQNNGTMAQSLKILIGSVGSKSNKVDYVKGLLSFLARHSNLSKSVLWTSATTRVASLYSAADVYAINSQGLGETFGRVTIEAMAFGLPVLGTDAGGTQEIVEHNVTGLLHPIGRAGNRVLAQNLRFLLENRLAREQMGMEGRKKVQRMFLKQHMYEKLVEVLVKCMRRI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
