Glyma07g03860 - SoyBase

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Report for Sequence Feature Glyma07g03860

Feature Type:	gene_model
Chromosome:	Gm07
Start:	2709826
stop:	2711560
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g03860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80440	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:30241763-30242827 FORWARD LENGTH=354	SoyBase	E_val: 4.00E-128	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF212	Panther		JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7II60	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7II60_MEDTR	SoyBase	E_val: 1.00E-151	ISS
UniRef100_I1KH62	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KH62_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g03860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g03860

Paralog	Evidence	Comments
Glyma08g22170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g03860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g034400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g03860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g03860

Limit To All Plant Sequences

>Glyma07g03860.1   sequence type=CDS   gene model=Glyma07g03860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTAATTTCAGGATTACCGGAGGACGTAGCCCGAGACTGTTTAATTCGGGTTTCGTATCAGCAGTTCCCAACGGTGGCGTCGGTGTGCAAACTCTGGAAATCGGAGATTCACGCGCCGGAGTTCCGCCGTCAACGGCGTAGCACAAAGCACGCCCAGAAGCTCATAGCGATGGTTCAAGCACGCGTCGAACTGGGAACCGGTTCGACCAAGCGACTGACGAACCCGGTTTACCGGCTCAGCGTGTTCGAACCGGAAACGGGTAACTGGAGTGAGATTCCACCTCCGCCAGAATTTTATTCGGGGTTACCCATGTTCTGTCAGTTAGTGAGTGTCGGGTACGATCTGGTTGTGTTGGGTGGGTTGGACCCGAATTCGTGGGAAGCATCGAATTCGGTGTTTGTTTATAATTTCTTGTCGGCGAAGTGGCGCCGCGGGGCGGACATGCCGGGTGGGCCTCGCACATTCTTCGCGTGCGCGTCGGATTCCGAGGAGACAGTTTTTGTTGCCGGCGGACACGACAACGAGAAGAACGCGCTGCGGTCAGCGTTGGCCTATGATGTTACCTCGGACCTGTGGGTCATGCTTCCGGACATGGAGGCGGAGCGCGACGAGTGCAAGGGCGTTTTCTGCCGCGGGAGGTTCGTCGCTGTTGGGGGTTACCCGACGGAGACGCAGGGAAGGTTCGTGAAGAGTGCGGAGGCGTTCGATCCCGCCACGCGGAGTTGGAGCGAAGTGAAGGAGGACTTCTTGGATTGCGCCACGTGTCCGAGGACCTTCGTGGACGGTGGCGATGACGAGGGGGTGTTCTTGTGCAGCGGCGGGGACCTGATGGCCCTCCGTGGGGACACGTGGCAGATGATGGCGACCCTGCCGGGGGAGATACGCAACGTGGCGTACGTTGGGGCGTTTGATGGGACGCTGGTGTTGATTGGATCGAGCGGCTACGGTGAAGTCCACGTGTCTTTTGCGTTCGATGTGAAGAGTTGCTGTTGGAGGAAACTGGAGAGCCCAGAAGGGTTCAGGGGCCATGTCCAAACCGGTTGTGTTTTGGAGATTTAA

Predicted protein sequences of Glyma07g03860

Limit To All Plant Sequences

>Glyma07g03860.1   sequence type=predicted peptide   gene model=Glyma07g03860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELISGLPEDVARDCLIRVSYQQFPTVASVCKLWKSEIHAPEFRRQRRSTKHAQKLIAMVQARVELGTGSTKRLTNPVYRLSVFEPETGNWSEIPPPPEFYSGLPMFCQLVSVGYDLVVLGGLDPNSWEASNSVFVYNFLSAKWRRGADMPGGPRTFFACASDSEETVFVAGGHDNEKNALRSALAYDVTSDLWVMLPDMEAERDECKGVFCRGRFVAVGGYPTETQGRFVKSAEAFDPATRSWSEVKEDFLDCATCPRTFVDGGDDEGVFLCSGGDLMALRGDTWQMMATLPGEIRNVAYVGAFDGTLVLIGSSGYGEVHVSFAFDVKSCCWRKLESPEGFRGHVQTGCVLEI*

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