Glyma07g03680 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g03680): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g03680): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g03680

Feature Type:	gene_model
Chromosome:	Gm07
Start:	2547527
stop:	2551659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g03680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80230	AT	Annotation by Michelle Graham. TAIR10: Rubredoxin-like superfamily protein \| chr1:30169784-30170999 REVERSE LENGTH=171	SoyBase	E_val: 7.00E-62	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005740	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial envelope	SoyBase	N/A	ISS
GO:0004129	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytochrome-c oxidase activity	SoyBase	N/A	ISS
KOG3352	KOG	Cytochrome c oxidase, subunit Vb/COX4	JGI		ISS
PTHR10122	Panther	CYTOCHROME C OXIDASE	JGI		ISS
PF01215	PFAM	Cytochrome c oxidase subunit Vb	JGI		ISS
UniRef100_G7IMH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit 5B n=1 Tax=Medicago truncatula RepID=G7IMH7_MEDTR	SoyBase	E_val: 2.00E-75	ISS
UniRef100_I1KH44	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KH44_SOYBN	SoyBase	E_val: 3.00E-116	ISS

Expression Patterns of Glyma07g03680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g03680 not represented in the dataset	Glyma07g03680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g03680

Paralog	Evidence	Comments
Glyma08g22410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g03680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g032800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g03680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g03680

Limit To All Plant Sequences

>Glyma07g03680.2   sequence type=transcript   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATAATAAAATATAAGTATTTCATTTTCAGCGTTCCATGGGTTGGGTTTGGACCAATCCATAGCCGAAGAAGAGAAAAAAGAGACAAGGACCGTCTTGAGTTAATTTGATTCAGTGTAGCAGCCAGCAGCCATAAGCAACGCAACAATTCCATTTCCAGTTTCTGATTCGTCACGTCAGACAAAGGAAGGGGTTAGGGTGTGACCTGAGATCAAAATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGTGATGATGATCACCATTGATTGCATCCTTCAATTAAATCTGGAATAAATTCTGGAAAGATGGAGAGACATTGTTTAGCATACACTCTGGCCTTTCAAAATCCTGTGGCCTAAGTTTGATTTTGATTTGTCTATACCTTATTGTGTCACAACTTTTGAGATAGAAAGTTTATGCGATTATTTGAACGCAGGATGCTCATTTGCTTGAGCTACCAATTCTGTTAGACTATGTTTTGTGCGTTGTGAAATAATTAATAGAACTTGACGATTCTTTAACTGGTTTTGAATTTCTGAAACCTTGGATGATTTTGAGCACCTAAACCATGAAATGGATTGTTTTGGAGAAGGCAAGTGAAGAAGAGACAGAATTCAGAATTGAATGACAGCTTTTTAAGAACATGTTTGGAAATTATTTAGGTGTGAGCGTAATGGCGAGGAGGGTCCTCTTGCCACCCAAAACCTCAAATATTTGTATGAGAGGCGTGTTTTATTTCAGTCTATTATGTATCACTTTCATTCGACATGTTTAAAATTCCTGAACATATCTTGAAGGAATCATCTTGTTGAAGAATCTTTTGCGGATGAAAGGCCATGTGAAATGTTTGTTTTAATTAAGTTCTAATTCCAAACACGTGGAACTTTCATCTGGATATGCAATATCTAGCTTCCGAAATTGACAATGAATCCGTAGTATG

>Glyma07g03680.3   sequence type=transcript   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATAATAAAATATAAGTATTTCATTTTCAGCGTTCCATGGGTTGGGTTTGGACCAATCCATAGCCGAAGAAGAGAAAAAAGAGACAAGGACCGTCTTGAGTTAATTTGATTCAGTGTAGCAGCCAGCAGCCATAAGCAACGCAACAATTCCATTTCCAGTTTCTGATTCGTCACGTCAGACAAAGGAAGGGGTTAGGGTGTGACCTGAGATCAAAATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGTGATGATGATCACCATTGATTGCATCCTTCAATTAAATCTGGAATAAATTCTGGAAAGATGGAGAGACATTGTTTAGCATACACTCTGGCCTTTCAAAATCCTGTGGCCTAAGTTTGATTTTGATTTGTCTATACCTTATTGTGTCACAACTTTTGAGATAGAAAGTTTATGCGATTATTTGAACGCAGGATGCTCATTTGCTTGAGCTACCAATTCTGTTAGACTATGTTTTGTGCGTTGTGAAATAATTAATAGAACTTGACGATTCTTTAACTGGTTTTGAATTTCTGAAACCTTGGATGATTTTGAGCACCTAAACCATGAAATGGATTGTTTTGGAGAAGGCAAGTGAAGAAGAGACAGAATTCAGAATTGAATGACAGCTTTTTAAGAACATGTTTGGAAATTATTTAGGTGTGAGCGTAATGGCGAGGAGGGTCCTCTTGCCACCCAAAACCTCAAATATTTGTATGAGAGGCGTGTTTTATTTCAGTCTATTATGTATCACTTTCATTCGACATGTTTAAAATTCCTGAACATATCTTGAAGGAATCATCTTGTTGAAGAATCTTTTGCGGATGAAAGGCCATGTGAAATGTTTGTTTTAATTAAGTTCTAATTCCAAACACGTGGAACTTTCATCTGGATATGCAATATCTAGCTTCCGAAATTGACAATGAATCCGTAGTATG

>Glyma07g03680.4   sequence type=transcript   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATAATAAAATATAAGTATTTCATTTTCAGCGTTCCATGGGTTGGGTTTGGACCAATCCATAGCCGAAGAAGAGAAAAAAGAGACAAGGACCGTCTTGAGTTAATTTGATTCAGTGTAGCAGCCAGCAGCCATAAGCAACGCAACAATTCCATTTCCAGTTTCTGATTCGTCACGTCAGACAAAGGAAGGGGTTAGGGTGTGACCTGAGATCAAAATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTGTAAGTTCATAATGACTTTTAGAATATCTTCTACTGTTA

Coding sequences of Glyma07g03680

Limit To All Plant Sequences

>Glyma07g03680.1   sequence type=CDS   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGTGATGATGATCACCATTGA

>Glyma07g03680.2   sequence type=CDS   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAGGACCTGGTGGACCACCCGATGGACATGGTGATGATGATCACCATTGA

>Glyma07g03680.3   sequence type=CDS   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGGTGAGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTCTTGAAGTGGTAG

>Glyma07g03680.4   sequence type=CDS   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCTCCTCCGCCGCCGCCGCCGCCACCGCCACTCCCCGATCTGCTTCCGCCTCCGCCAGATTCGCCGCTCTCTCTCGCTCCTGCCTCTACTTCTCAACCCAATCCGAGGATGCTACTGCGATCAAAAAGAAGGTTGAGGACATAATGCCAATCGCTACTGGCCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAGGGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAGCCCCATGAATGTCCAGTGTGCGCACAGTATTTTGTTGTAAGTTCATAA

Predicted protein sequences of Glyma07g03680

Limit To All Plant Sequences

>Glyma07g03680.1   sequence type=predicted peptide   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRRLLSSHLKTLASSAAAAATATPRSASASARFAALSRSCLYFSTQSEDATAIKKKVEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGPPDGHGDDDHH*

>Glyma07g03680.2   sequence type=predicted peptide   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRRLLSSHLKTLASSAAAAATATPRSASASARFAALSRSCLYFSTQSEDATAIKKKVEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEEDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGPPDGHGDDDHH*

>Glyma07g03680.3   sequence type=predicted peptide   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRRLLSSHLKTLASSAAAAATATPRSASASARFAALSRSCLYFSTQSEDATAIKKKVEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGGEMSMMLSGFGWRKTSPMNVQCAHSILFLKW*

>Glyma07g03680.4   sequence type=predicted peptide   gene model=Glyma07g03680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRRLLSSHLKTLASSAAAAATATPRSASASARFAALSRSCLYFSTQSEDATAIKKKVEDIMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKDKPHECPVCAQYFVVSS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain