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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80160 | AT | Annotation by Michelle Graham. TAIR10: Lactoylglutathione lyase / glyoxalase I family protein | chr1:30151101-30151930 FORWARD LENGTH=167 | SoyBase | E_val: 6.00E-94 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0046482 | GO-bp | Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004462 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lactoylglutathione lyase activity | SoyBase | N/A | ISS |
| KOG2944 | KOG | Glyoxalase | JGI | ISS | |
| PTHR10374 | Panther | LACTOYLGLUTATHIONE LYASE | JGI | ISS | |
| PTHR10374:SF0 | Panther | LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) | JGI | ISS | |
| PF00903 | PFAM | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | JGI | ISS | |
| UniRef100_B9RV37 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lactoylglutathione lyase, putative n=1 Tax=Ricinus communis RepID=B9RV37_RICCO | SoyBase | E_val: 5.00E-101 | ISS |
| UniRef100_I1KH31 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KH31_SOYBN | SoyBase | E_val: 4.00E-123 | ISS |
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Glyma07g03560 not represented in the dataset |
Glyma07g03560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g22540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g031700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g03560.2 sequence type=transcript gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTACTTCCGTGACAATCTTTCTTAGCTAGATCAGTGCCTCATTTTTCTTTCAGTTTTCCTGCTTCTTCTCTTCTTCAACTGGTTTTGAGATTGCCATTTTCTTATCTTGTTTAGTTTAGCTTGTTTGGTTGAGAGGAATTAATTATTTTGTATAAAACAATGAAGGAGAGTGTAGGAAACCCTTTGCGTCTTCAATCTGTGAATCATATCTCCCTCATATGCAGATCAGTGGAACAATCAATGGATTTCTATCAGAACGTTCTTGGATTTTACCCCATCAGGAGGCCTGGCTCTTTAGATTTTGATGGGGCTATTCGGCTACGGAATTGGAATTCATTTGCTAGAAGCAGAGAACCCTGAAAAGTTGCCAAAGAAGAAGGAAATTAATCCAAAGGATAATCATATATCTTTCCAGTGTGAGAGCATGGTTGCAGTGGAGAAGAAGCTGAAAGAAATGGAAATTGACTATGTGCGAGCAACGGTGGAGGAAGGTGGAATCCAAGTGGATCAACTGTTTTTCCACGACCCTGATGGGTTCATGATCGAGATATGCAACTGTGATAGCCTCCCTGTGATTCCCTTAGTTGGTGAGGTGGCAAGATCATGTTCCCTTGTGAATCTTGAGAAGATGCAGAATCAGCAGCAGATACAGAAAATGCTCCAGCAACTTTGATGAGCCTTTTCTGTTATGTTATGTGATCAGAGCATCCTCACGGATCACGAGGACTTGTTGCTTTTTTTTTTATGTGGTTGAGTTGTCAATGTGTCATTCTGTTCCTTTTGTTTTGTTTTCTTTAATTGTGTTATATAATAATAAACAATCTGCCAAATAGATCAGCGCTTTTGCAACCATTGATTAGAGTGTTTCATAGTGGAGTTTGCTTTGCTGCTCTCTCTTTTTAATTTAATATGACTTCTGGTAAAGTACTTCTTTTAGTCATTTTTTGTGTGTTCAAGTGACCCACGTTGACATGATAGTATATAATGGGATGATTGCATGTCCTTTAACTAAGGATCGCTCTAGAAACTGGAGATTAAATAATTTGGTCATGTCTTATACCTTTTTAATAACCTTTTTATCAATGAGTTTAACAGCTATTCATATCATACATGATAGTACATAATTAAATGAAA >Glyma07g03560.3 sequence type=transcript gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATCATTACAAACCATAAGAAGATCTTTTTCTTTTTTTAATTTCCAGATAAAACTAATGCCTTGATGTCTTTTTTAATAAACATGATAAAACATAATTTTTTTCCCCAATATATATATTTGTTGTTTTCTTTTCCTAGGTATAGGTAGATAATTTTGGTGGGTTTTGCTTATTTTGAGGGTTTTCATTTTCTATGTGGCTACTTTGCAGGCTATTCGGCTACGGAATTGGAATTCATTTGCTAGAAGCAGAGAACCCTGAAAAGTTGCCAAAGAAGAAGGAAATTAATCCAAAGGATAATCATATATCTTTCCAGTGTGAGAGCATGGTTGCAGTGGAGAAGAAGCTGAAAGAAATGGAAATTGACTATGTGCGAGCAACGGTGGAGGAAGGTGGAATCCAAGTGGATCAACTGTTTTTCCACGACCCTGATGGGTTCATGATCGAGATATGCAACTGTGATAGCCTCCCTGTGATTCCCTTAGTTGGTGAGGTGGCAAGATCATGTTCCCTTGTGAATCTTGAGAAGATGCAGAATCAGCAGCAGATACAGAAAATGCTCCAGCAACTTTGATGAGCCTTTTCTGTTATGTTATGTGATCAGAGCATCCTCACGGATCACGAGGACTTGTTGCTTTTTTTTTTATGTGGTTGAGTTGTCAATGTGTCATTCTGTTCCTTTTGTTTTGTTTTCTTTAATTGTGTTATATAATAATAAACAATCTGCCAAATAGATCAGCGCTTTTGCAACCATTGATTAGAGTGTTTCATAGTGGAGTTTGCTTTGCTGCTCTCTCTTTTTAATTTAATATGACTTCTGGTAAAGTACTTCTTTTAGTCATTTTTTGTGTGTTCAAGTGACCCACGTTGACATGATAGTATATAATGGGATGATTGCATGTCCTTTAACTAAGGATCGCTCTAGAAACTGGAGATTAAATAATTTGGTCATGTCTTATACCTTTTTAATAACCTTTTTATCAATGAGTTTAACAGCTATTCATATCATACATGATAGTACATAATTAAATGAAA
>Glyma07g03560.1 sequence type=CDS gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGGAGAGTGTAGGAAACCCTTTGCGTCTTCAATCTGTGAATCATATCTCCCTCATATGCAGATCAGTGGAACAATCAATGGATTTCTATCAGAACGTTCTTGGATTTTACCCCATCAGGAGGCCTGGCTCTTTAGATTTTGATGGGGCATGGCTATTCGGCTACGGAATTGGAATTCATTTGCTAGAAGCAGAGAACCCTGAAAAGTTGCCAAAGAAGAAGGAAATTAATCCAAAGGATAATCATATATCTTTCCAGTGTGAGAGCATGGTTGCAGTGGAGAAGAAGCTGAAAGAAATGGAAATTGACTATGTGCGAGCAACGGTGGAGGAAGGTGGAATCCAAGTGGATCAACTGTTTTTCCACGACCCTGATGGGTTCATGATCGAGATATGCAACTGTGATAGCCTCCCTGTGATTCCCTTAGTTGGTGAGGTGGCAAGATCATGTTCCCTTGTGAATCTTGAGAAGATGCAGAATCAGCAGCAGATACAGAAAATGCTCCAGCAACTTTGA >Glyma07g03560.2 sequence type=CDS gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGCTATTCGGCTACGGAATTGGAATTCATTTGCTAGAAGCAGAGAACCCTGAAAAGTTGCCAAAGAAGAAGGAAATTAATCCAAAGGATAATCATATATCTTTCCAGTGTGAGAGCATGGTTGCAGTGGAGAAGAAGCTGAAAGAAATGGAAATTGACTATGTGCGAGCAACGGTGGAGGAAGGTGGAATCCAAGTGGATCAACTGTTTTTCCACGACCCTGATGGGTTCATGATCGAGATATGCAACTGTGATAGCCTCCCTGTGATTCCCTTAGTTGGTGAGGTGGCAAGATCATGTTCCCTTGTGAATCTTGAGAAGATGCAGAATCAGCAGCAGATACAGAAAATGCTCCAGCAACTTTGA >Glyma07g03560.3 sequence type=CDS gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGCTACTTTGCAGGCTATTCGGCTACGGAATTGGAATTCATTTGCTAGAAGCAGAGAACCCTGAAAAGTTGCCAAAGAAGAAGGAAATTAATCCAAAGGATAATCATATATCTTTCCAGTGTGAGAGCATGGTTGCAGTGGAGAAGAAGCTGAAAGAAATGGAAATTGACTATGTGCGAGCAACGGTGGAGGAAGGTGGAATCCAAGTGGATCAACTGTTTTTCCACGACCCTGATGGGTTCATGATCGAGATATGCAACTGTGATAGCCTCCCTGTGATTCCCTTAGTTGGTGAGGTGGCAAGATCATGTTCCCTTGTGAATCTTGAGAAGATGCAGAATCAGCAGCAGATACAGAAAATGCTCCAGCAACTTTGA
>Glyma07g03560.1 sequence type=predicted peptide gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKESVGNPLRLQSVNHISLICRSVEQSMDFYQNVLGFYPIRRPGSLDFDGAWLFGYGIGIHLLEAENPEKLPKKKEINPKDNHISFQCESMVAVEKKLKEMEIDYVRATVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVIPLVGEVARSCSLVNLEKMQNQQQIQKMLQQL* >Glyma07g03560.2 sequence type=predicted peptide gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLFGYGIGIHLLEAENPEKLPKKKEINPKDNHISFQCESMVAVEKKLKEMEIDYVRATVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVIPLVGEVARSCSLVNLEKMQNQQQIQKMLQQL* >Glyma07g03560.3 sequence type=predicted peptide gene model=Glyma07g03560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWLLCRLFGYGIGIHLLEAENPEKLPKKKEINPKDNHISFQCESMVAVEKKLKEMEIDYVRATVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVIPLVGEVARSCSLVNLEKMQNQQQIQKMLQQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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