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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15850 | AT | Annotation by Michelle Graham. TAIR10: fatty acid desaturase 5 | chr3:5359087-5360998 FORWARD LENGTH=371 | SoyBase | E_val: 3.00E-172 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0010205 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoinhibition | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009979 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 16:0 monogalactosyldiacylglycerol desaturase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016717 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | SoyBase | N/A | ISS |
| KOG1600 | KOG | Fatty acid desaturase | JGI | ISS | |
| PTHR11351 | Panther | STEAROYL-COA DESATURASE | JGI | ISS | |
| PTHR11351:SF2 | Panther | ACYL-COA DESATURASE | JGI | ISS | |
| PF00487 | PFAM | Fatty acid desaturase | JGI | ISS | |
| UniRef100_G7JGX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase n=1 Tax=Medicago truncatula RepID=G7JGX9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233820C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233820C related cluster n=1 Tax=unknown RepID=UPI000233820C | SoyBase | E_val: 0 | ISS |
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Glyma07g03370 not represented in the dataset |
Glyma07g03370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g22730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g030000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g03370.3 sequence type=transcript gene model=Glyma07g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAGGGTTTAATCTGGACCTTATTAGGCGAATCCCTCTAGCCAATGTGATTCATAGGCCAACACAGCCTTATCCTCTCTATTCCCACTTTAACTCCACCCTACATTTTTCTCTTCACCGGCTACACCACAAGTGGTTTTTTTAGTTGGTCACTTGCACATCACAATCAACCTCACCACATAAAAACCCAAACCCAAACCCAAAATCCCTCCAACACAACATAAAACAACACAACACCATTCAATTCCCTTCATGGCTCTCCTCACCTCCCAACCTAAAAAACCCATTCTCCATCGCTTCACCACCCTTCACCGCCCACTTCCACGCTTAGATAGAACCGTTCTTGGTCTTGGCTCCTTCTCTCACAATACTCTCTCCATTAAAAAATTTAACTTTAACCCAAAGCAAACCAAAATTTCCCTTAAAAACAACCCCTTTACCTATAATTTGGCAGTGACAGCCAAAGCCAATGCCAATGCTGCATTTGGAGAAGGTTTGGAGGCAGGGGAGGTGACATTGAAACACAGAAAGATTTTGTTGTCTGAGGTTGAGGTGAAGAGACAGAGAAGAGTCTTCTTTGGGAGGAAATGGAACTCTTTGGATGTTGGCACTGCTGGAATTGTGTTGGCCATGCATCTCCTTTGCCTCTTTGCTCCTTTCCATTTCAATTGGCCAGCTTTTAGGGTGGCTGTGGCTCTCTATATTGTCACTGGCCTATTTGGCATCACTCTTTCTTTCCATAGGAACCTTTCTCACAGGAGTTTCAAGCTTCCCAAATGGCTTGAATACTTCTTTGCCTATTGTGGGGTCCTGGCTCTTCAGGGGAATCCAATTGACTGGGTGAGCACCCATAGATACCATCACCAGTTTTGTGATTCTGAGAGAGATCCTCATAGCCCAACTGAAGGATTCTGGTTCAGCCATATGAGTTGGCTATTTGATACCAGTTCTGTCATAGAAAGGTGTGGAGAAGCCAACAATGTTGGTGATTTAGAGAAACAATCCTTCTATAGATTTCTCCGAAGCTCTTACCTTGTCCATCCTTTTGCTTTGGGAGCCCTTCTATATGCAGCAGGAGGATTTCCTTTCCTTGTTTGGGGAATGGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTAGAGTGGTGGCAACTAGACATGACTTGGTACGTTGTGAGATTTCTCGAAGCTATTGGATTGGCCACTGACGTCAAGTTACCCACTGAGAGTCACAAGCAGAAAATGGCACTCAATAGTGATCCAATAGACACATGAAACACAATGAATGATAACAAAATGAAAGAAAAAGGATTTTAGAGGTACTTGTTGATGGCACAAAACCTTTGGTAGGGAAATTGTTCTTTTGGGTCTTACTTTCAGCCATCACGAGTGCTGGATTTGACCATGTATATGGGACTAGAAATAATATAACTATAGATTGACACAAAATAATATTTAGTTATTATCTTATTATATTGCGAATGAAAGTCGGTTATTCAGCTTGACTGAAAGTCGGTTTAAGGGGGTGATTTTGTACTCAATTGAATTGAAATGATTTTGGGTTGAAAGTGGTGGGATGGGTGTTTGTTCGGGGTGATTTCGGATTGTTATGTAAAAAA
>Glyma07g03370.2 sequence type=CDS gene model=Glyma07g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCCTCACCTCCCAACCTAAAAAACCCATTCTCCATCGCTTCACCACCCTTCACCGCCCACTTCCACGCTTAGATAGAACCGTTCTTGGTCTTGGCTCCTTCTCTCACAATACTCTCTCCATTAAAAAATTTAACTTTAACCCAAAGCAAACCAAAATTTCCCTTAAAAACAACCCCTTTACCTATAATTTGGCAGTGACAGCCAAAGCCAATGCCAATGCTGCATTTGGAGAAGGTTTGGAGGCAGGGGAGGTGACATTGAAACACAGAAAGATTTTGTTGTCTGAGGTTGAGGTGAAGAGACAGAGAAGAGTCTTCTTTGGGAGGAAATGGAACTCTTTGGATGTTGGCACTGCTGGAATTGTGTTGGCCATGCATCTCCTTTGCCTCTTTGCTCCTTTCCATTTCAATTGGCCAGCTTTTAGGGTGGCTGTGGCTCTCTATATTGTCACTGGCCTATTTGGCATCACTCTTTCTTTCCATAGGAACCTTTCTCACAGGAGTTTCAAGCTTCCCAAATGGCTTGAATACTTCTTTGCCTATTGTGGGGTCCTGGCTCTTCAGGGGAATCCAATTGACTGGGTGAGCACCCATAGATACCATCACCAGTTTTGTGATTCTGAGAGAGATCCTCATAGCCCAACTGAAGGATTCTGGTTCAGCCATATGAGTTGGCTATTTGATACCAGTTCTGTCATAGAAAGGTGTGGAGAAGCCAACAATGTTGGTGATTTAGAGAAACAATCCTTCTATAGATTTCTCCGAAGCTCTTACCTTGTCCATCCTTTTGCTTTGGGAGCCCTTCTATATGCAGCAGGAGGATTTCCTTTCCTTGTTTGGGGAATGGGAGTGAGGATTGTTTGGGTTTATCATATAACCTGGTTTGTAAACTCAGCTTGCCATGTCTGGGGGAATCAGGCATGGAACACCAGGGAATTGTCCAGAAATAATTGGTGGGTGGCGTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGACTAGAGTGGTGGCAACTAGACATGACTTGGTACGTTGTGAGATTTCTCGAAGCTATTGGATTGGCCACTGACGTCAAGTTACCCACTGAGAGTCACAAGCAGAAAATGGCACTCAATAGTGATCCAATAGACACATGA >Glyma07g03370.3 sequence type=CDS gene model=Glyma07g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCCTCACCTCCCAACCTAAAAAACCCATTCTCCATCGCTTCACCACCCTTCACCGCCCACTTCCACGCTTAGATAGAACCGTTCTTGGTCTTGGCTCCTTCTCTCACAATACTCTCTCCATTAAAAAATTTAACTTTAACCCAAAGCAAACCAAAATTTCCCTTAAAAACAACCCCTTTACCTATAATTTGGCAGTGACAGCCAAAGCCAATGCCAATGCTGCATTTGGAGAAGGTTTGGAGGCAGGGGAGGTGACATTGAAACACAGAAAGATTTTGTTGTCTGAGGTTGAGGTGAAGAGACAGAGAAGAGTCTTCTTTGGGAGGAAATGGAACTCTTTGGATGTTGGCACTGCTGGAATTGTGTTGGCCATGCATCTCCTTTGCCTCTTTGCTCCTTTCCATTTCAATTGGCCAGCTTTTAGGGTGGCTGTGGCTCTCTATATTGTCACTGGCCTATTTGGCATCACTCTTTCTTTCCATAGGAACCTTTCTCACAGGAGTTTCAAGCTTCCCAAATGGCTTGAATACTTCTTTGCCTATTGTGGGGTCCTGGCTCTTCAGGGGAATCCAATTGACTGGGTGAGCACCCATAGATACCATCACCAGTTTTGTGATTCTGAGAGAGATCCTCATAGCCCAACTGAAGGATTCTGGTTCAGCCATATGAGTTGGCTATTTGATACCAGTTCTGTCATAGAAAGGTGTGGAGAAGCCAACAATGTTGGTGATTTAGAGAAACAATCCTTCTATAGATTTCTCCGAAGCTCTTACCTTGTCCATCCTTTTGCTTTGGGAGCCCTTCTATATGCAGCAGGAGGATTTCCTTTCCTTGTTTGGGGAATGGTGGGTGGCGTTGCTTGCATTTGGTGA
>Glyma07g03370.2 sequence type=predicted peptide gene model=Glyma07g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLTSQPKKPILHRFTTLHRPLPRLDRTVLGLGSFSHNTLSIKKFNFNPKQTKISLKNNPFTYNLAVTAKANANAAFGEGLEAGEVTLKHRKILLSEVEVKRQRRVFFGRKWNSLDVGTAGIVLAMHLLCLFAPFHFNWPAFRVAVALYIVTGLFGITLSFHRNLSHRSFKLPKWLEYFFAYCGVLALQGNPIDWVSTHRYHHQFCDSERDPHSPTEGFWFSHMSWLFDTSSVIERCGEANNVGDLEKQSFYRFLRSSYLVHPFALGALLYAAGGFPFLVWGMGVRIVWVYHITWFVNSACHVWGNQAWNTRELSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQLDMTWYVVRFLEAIGLATDVKLPTESHKQKMALNSDPIDT* >Glyma07g03370.3 sequence type=predicted peptide gene model=Glyma07g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALLTSQPKKPILHRFTTLHRPLPRLDRTVLGLGSFSHNTLSIKKFNFNPKQTKISLKNNPFTYNLAVTAKANANAAFGEGLEAGEVTLKHRKILLSEVEVKRQRRVFFGRKWNSLDVGTAGIVLAMHLLCLFAPFHFNWPAFRVAVALYIVTGLFGITLSFHRNLSHRSFKLPKWLEYFFAYCGVLALQGNPIDWVSTHRYHHQFCDSERDPHSPTEGFWFSHMSWLFDTSSVIERCGEANNVGDLEKQSFYRFLRSSYLVHPFALGALLYAAGGFPFLVWGMVGGVACIW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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