Glyma07g03320 - SoyBase

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Report for Sequence Feature Glyma07g03320

Feature Type:	gene_model
Chromosome:	Gm07
Start:	2337398
stop:	2341853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g03320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G32440	AT	Annotation by Michelle Graham. TAIR10: Ubiquitin system component Cue protein \| chr5:12077014-12078396 FORWARD LENGTH=264	SoyBase	E_val: 7.00E-53	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF02845	PFAM	CUE domain	JGI		ISS
UniRef100_F4KED5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin system component Cue protein n=1 Tax=Arabidopsis thaliana RepID=F4KED5_ARATH	SoyBase	E_val: 3.00E-50	ISS
UniRef100_I1KH00	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KH00_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g03320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g03320 not represented in the dataset	Glyma07g03320 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g03320

Paralog	Evidence	Comments
Glyma08g22790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g03320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g029500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g03320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g03320

Limit To All Plant Sequences

>Glyma07g03320.2   sequence type=transcript   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAAAATTAACGAGTGACGCTCCCCTCCCCTCCCCACCTCTTGATTCAGTTAGGGGTTTTTTAGGGAGAGAATTTCCTGCAGAAGAAGAATCGTTGGTAACCAACGCGCTGGGGAAGCACGTGGAATACAGTTTCGGTTCGTCACCTCTGTGGCACAGCACTATAAATAATCCTCAAGTTTCTACACTTTACCTCTCCCAGGAGGAACAGCGCAGAACCTAACCCTCACGAAAGCCCTTTTCGATTCCGATAACTCTCGTTGTTCCGAAACCCTAACCCTAACCGGGTTTTTTCGTTTGTTTGGATTGAATTGGCATCGGAGGGAGGCGATCGATTGGAAATTGGTAGTAGTAGTTTAGCGTTGAAGAACGATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGTGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGAGCAACCCCTTTCCTGGGCGCTTCCCACCTGATGTCTTCTAATGGGGTGAATGTTTAGAATGTAATAATAAAGGCAGCAAATAGCTGCATCAGGTTGATTAATTATGTCGTGTTATTTTTCTCTCTTTCTTACAAAGGTCAAGCGTTGTTGTAGTTCAGGACTTCAGGTTATTCTATCCTACAGTATCCGAATATACTGTCACTCAGTTCAATTACCCCGTTTGGAATTTTATGATTTCGAGTTGTAGTCTAGCGAGATTGCGACGATGTTCAAGGTTAGCCTTTATCCGTCGCAATTGATATTTTAGATGAAGTTTGATAATCTCTTTTTGGCTAAAAAATGATCATTTTTTTTAAAAATTCTCTTGTGATTATAAAATTTATTTTTCAAAATAAGTTAAATTATAAGTGAAACATCG

>Glyma07g03320.4   sequence type=transcript   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCAGTTAGGGGTTTTTTAGGGAGAGAATTTCCTGCAGAAGAAGAATCGTTGGTAACCAACGCGCTGGGGAAGCACGTGGAATACAGTTTCGGTTCGTCACCTCTGTGGCACAGCACTATAAATAATCCTCAAGTTTCTACACTTTACCTCTCCCAGGAGGAACAGCGCAGAACCTAACCCTCACGAAAGCCCTTTTCGATTCCGATAACTCTCGTTGTTCCGAAACCCTAACCCTAACCGGGTTTTTTCGTTTGTTTGGATTGAATTGGCATCGGAGGGAGGCGATCGATTGGAAATTGGTAGTAGTAGTTTAGCGTTGAAGAACGATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGTTTGAATCAGCTTTTTCTCTTTTTTGTTCAGCCACAGCTGACCCATTAAGCTA

>Glyma07g03320.5   sequence type=transcript   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATTCAGTTAGGGGTTTTTTAGGGAGAGAATTTCCTGCAGAAGAAGAATCGTTGGTAACCAACGCGCTGGGGAAGCACGTGGAATACAGTTTCGGTTCGTCACCTCTGTGGCACAGCACTATAAATAATCCTCAAGTTTCTACACTTTACCTCTCCCAGGAGGAACAGCGCAGAACCTAACCCTCACGAAAGCCCTTTTCGATTCCGATAACTCTCGTTGTTCCGAAACCCTAACCCTAACCGGGTTTTTTCGTTTGTTTGGATTGAATTGGCATCGGAGGGAGGCGATCGATTGGAAATTGGTAGTAGTAGTTTAGCGTTGAAGAACGATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGAAGAAATAGAAGGGAAGGACATGATGTCACTGTTAACGATGGTAATCATGGAGATTGTGGTCATTCCTGAACCCGACGCATTTGGATACTAATGGCTAGTAATGCATCATTACCTTGCACTTGCTTTCATCCACTTCTCTCCCTTTTGGGTTGAGAGTCAATCTAGTAATCTGCTATCTATAGGTTTACAAGTGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGAGCAACCCCTTTCCTGGGCGCTTCCCACCTGATGTCTTCTAATGGGGTGAATGTTTAGAATGTAATAATAAAGGCAGCAAATAGCTGCATCAGGTTGATTAATTATGTCGTGTTATTTTTCTCTCTTTCTTACAAAGGTCAAGCGTTGTTGTAGTTCAGGACTTCAGGTTATTCTATCCTACAGTATCCGAATATACTGTCACTCAGTTCAATTACCCCGTTTGGAATTTTATGATTTCGAGTTGTAGTCTAGCGAGATTGCGACGATGTTCAAGGTTAGCCTTTATCCGTCGCAATTGATATTTTAGATGAAGTTTGATAATCTCTTTTTGGCTAAAAAA

Coding sequences of Glyma07g03320

Limit To All Plant Sequences

>Glyma07g03320.1   sequence type=CDS   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGAAGAAATAGAAGGGAAGGACATGATGTCACTGTTAACGATGGTAATCATGGAGATTGTGGTCATTCCTGAACCCGACGCATTTGGATACTAA

>Glyma07g03320.2   sequence type=CDS   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGTGAATAACTATGCTTTGGCAATGCATTTGAAGCAGGCTCAACAGAGCAACCCCTTTCCTGGGCGCTTCCCACCTGATGTCTTCTAA

>Glyma07g03320.4   sequence type=CDS   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGTTTGA

>Glyma07g03320.5   sequence type=CDS   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTGCTGTGTGCGGAAGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCTCCAAGAGGCTCCGTTGTTCCTCTTCGCCGATTCGATTCCCTCCTCCTTCTTCCATCGACCAACTTCGCCCTCTCTTTCCCCACATGGACGACTTGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATATAGATGCTGCCATCAAGAGGTTGAATGAGCTTTGCTTGGGAACTGCCGATGGAAATGGAATTGCTGAAGAATCGGAGGTTGTCATTAATCTGGGTGCAGGTAAATTGGAAGGTGATGGAAATGCTTCTGTTTCTGAGGAGCAGCCTGCTTTGAACAATCACCTTCCTGCAGATGGAGCAGAATGGATTGACTTTTTTGTCAGGGAAATGATGGTTGCTACTAGTGTTGACGATGCTAGAGCCCGTGCTGCCAGGATGCTGGAGGTTCTAGAGAAATCAATCAGTGAAAGAGCAAAGGCTGAGGCAACTGATGCACTTCAGAAGGAAAATTTGATGCTTAAAGAGCAAATTGAAGCGTTAATTAAGGAGAAAAATTCTTTCAAAAATGCTTTTAGAATCCAGCATGAGCGATTTGCTGATTATGAGGTTAAGAACCAAGAGTTACAGCATTTGAAGCAATTGGTGTCTCAATACCAGGAGCAGATTAGAACCCTCGAGGAAGAAATAGAAGGGAAGGACATGATGTCACTGTTAACGATGGTAATCATGGAGATTGTGGTCATTCCTGAACCCGACGCATTTGGATACTAA

Predicted protein sequences of Glyma07g03320

Limit To All Plant Sequences

>Glyma07g03320.1   sequence type=predicted peptide   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSSIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGIAEESEVVINLGAGKLEGDGNASVSEEQPALNNHLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAEATDALQKENLMLKEQIEALIKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIRTLEEEIEGKDMMSLLTMVIMEIVVIPEPDAFGY*

>Glyma07g03320.2   sequence type=predicted peptide   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSSIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGIAEESEVVINLGAGKLEGDGNASVSEEQPALNNHLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAEATDALQKENLMLKEQIEALIKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIRTLEVNNYALAMHLKQAQQSNPFPGRFPPDVF*

>Glyma07g03320.4   sequence type=predicted peptide   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSSIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGIAEESEVVINLGAGKLEGDGNASVSEEQPALNNHLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAEATDALQKENLMLKEQIEALIKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIRTLEV*

>Glyma07g03320.5   sequence type=predicted peptide   gene model=Glyma07g03320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAAVCGSKRSFFEELPPSPPLSKRLRCSSSPIRFPPPSSIDQLRPLFPHMDDLVLERALQECGNDIDAAIKRLNELCLGTADGNGIAEESEVVINLGAGKLEGDGNASVSEEQPALNNHLPADGAEWIDFFVREMMVATSVDDARARAARMLEVLEKSISERAKAEATDALQKENLMLKEQIEALIKEKNSFKNAFRIQHERFADYEVKNQELQHLKQLVSQYQEQIRTLEEEIEGKDMMSLLTMVIMEIVVIPEPDAFGY*

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