SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g03300

Feature Type:gene_model
Chromosome:Gm07
Start:2330572
stop:2333908
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g03300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03500AT Annotation by Michelle Graham. TAIR10: Mediator complex, subunit Med7 | chr5:876673-877660 REVERSE LENGTH=168 SoyBaseE_val: 3.00E-88ISS
GO:0006357GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
KOG0570 KOG Transcriptional coactivator JGI ISS
PTHR21428Panther FAMILY NOT NAMED JGI ISS
PTHR21428:SF6Panther SUBFAMILY NOT NAMED JGI ISS
PF05983PFAM MED7 protein JGI ISS
UniRef100_B0BLB1UniRef Annotation by Michelle Graham. Most informative UniRef hit: CM0545.310.nc protein n=1 Tax=Lotus japonicus RepID=B0BLB1_LOTJA SoyBaseE_val: 1.00E-96ISS
UniRef100_I1KGZ6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGZ6_SOYBN SoyBaseE_val: 6.00E-118ISS

Expression Patterns of Glyma07g03300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g03300
ParalogEvidenceComments
Glyma08g22810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g03300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g029300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g03300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma07g03300
>Glyma07g03300.2   sequence type=transcript   gene model=Glyma07g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGATTCGTCTTTCTCTCTCTCTGACTCGAAATTTTGCAGATCTGGAAATGGCGACGGCAACGTACCCTCCACCGCCACCTTATTACAGACTTTACAAAGATTACTTGCAAAACCCTAAGTCTGCTCCCGACCCTCCACCGCCTATTGAAGGCACTTATCTTTGTTTTGGAGCCAATTACACCACTAGTGATGTTCTACCAACCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGCCCTAATGTTGATTTCAAGAAGGAGCTGAGGTCACTCAACGGAGAGTTGCAACTACACGTTTTGGAGCTTGCTGATATTCTTATTGAGAGACCTTCACAGTATGCAAGGAGAGTAGAAGAAATTTCAACAGTATTCAAAAACTTACACCACCTTTTAAATTCATTGCGTCCTCATCAGGCGAGAGCAACATTGATTCATATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAGAGGTTGAAAATGGTGATTTCTATTTTAACGGGACGAATGTGATCAACCCCAAATCTTCTAGGGACCAAAATGATGTTTGACTTGTTCTTGTCATTATTAGTCTTTTCTATTCTAACTTAATCTCTATTTGCAGGAGGAGAGAAGAAGCACGAAGGCTCCTTAACGAGTCCTTGGCAACACTTGATGGCCATTAGAGCATTCTATCTTGTATTCACAGCAAGAATCTACTGAGGAAATTAATTTTATTTGAAAAATGAATTTGGACCTCTAGATTTTAACAAATGAAAAGATTAAAACAAGTTGTGCAGCTTCCTCAAAAATGGTCACTTGACATAACTGGCTCGCGCTTGTTCTTCTTGATGAAGGCTGTTTTGCAGCATGCATGTGCAGAGATATTAGAAACAGAAGAATTGTTAGTAGTGTATAAAGTCTTAACTATTAATGGATGGACCTATCAGATTGTTGTCCACATTACCATCATTATTTATATCAATTTAGGATAGTGTTATGACGAGTTTTTCTTATTGAATATTATTTAAATACTATTATAGTACCCTTCTTTCTTTCAATAACATGATGGGTTTTCCT
Coding sequences of Glyma07g03300
>Glyma07g03300.1   sequence type=CDS   gene model=Glyma07g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGGCAACGTACCCTCCACCGCCACCTTATTACAGACTTTACAAAGATTACTTGCAAAACCCTAAGTCTGCTCCCGACCCTCCACCGCCTATTGAAGGCACTTATCTTTGTTTTGGAGCCAATTACACCACTAGTGATGTTCTACCAACCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGCCCTAATGTTGATTTCAAGAAGGAGCTGAGGTCACTCAACGGAGAGTTGCAACTACACGTTTTGGAGCTTGCTGATATTCTTATTGAGAGACCTTCACAGTATGCAAGGAGAGTAGAAGAAATTTCAACAGTATTCAAAAACTTACACCACCTTTTAAATTCATTGCGTCCTCATCAGGCGAGAGCAACATTGATTCATATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAGAGGAGGAGAGAAGAAGCACGAAGGCTCCTTAACGAGTCCTTGGCAACACTTGATGGCCATTAG

>Glyma07g03300.2   sequence type=CDS   gene model=Glyma07g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGGCAACGTACCCTCCACCGCCACCTTATTACAGACTTTACAAAGATTACTTGCAAAACCCTAAGTCTGCTCCCGACCCTCCACCGCCTATTGAAGGCACTTATCTTTGTTTTGGAGCCAATTACACCACTAGTGATGTTCTACCAACCTTGGAAGAACAAGGGGTGCGCCAGCTCTATTCTAAGGGCCCTAATGTTGATTTCAAGAAGGAGCTGAGGTCACTCAACGGAGAGTTGCAACTACACGTTTTGGAGCTTGCTGATATTCTTATTGAGAGACCTTCACAGTATGCAAGGAGAGTAGAAGAAATTTCAACAGTATTCAAAAACTTACACCACCTTTTAAATTCATTGCGTCCTCATCAGGCGAGAGCAACATTGATTCATATTTTGGAACTTCAGATACAGCGCCGTAAACAAGCAGTGGAGGACATAAAGAGGTTGAAAATGGTGATTTCTATTTTAACGGGACGAATGTGA
Predicted protein sequences of Glyma07g03300
>Glyma07g03300.1   sequence type=predicted peptide   gene model=Glyma07g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATATYPPPPPYYRLYKDYLQNPKSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQLYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEARRLLNESLATLDGH*

>Glyma07g03300.2   sequence type=predicted peptide   gene model=Glyma07g03300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATATYPPPPPYYRLYKDYLQNPKSAPDPPPPIEGTYLCFGANYTTSDVLPTLEEQGVRQLYSKGPNVDFKKELRSLNGELQLHVLELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRLKMVISILTGRM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo