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Report for Sequence Feature Glyma07g03240

Feature Type:gene_model
Chromosome:Gm07
Start:2288091
stop:2289318
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g03240
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80450AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr1:30244155-30244688 REVERSE LENGTH=177 SoyBaseE_val: 4.00E-29ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_D7KX58UniRef Annotation by Michelle Graham. Most informative UniRef hit: VQ motif-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KX58_ARALL SoyBaseE_val: 3.00E-25ISS
UniRef100_I1KGY9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGY9_SOYBN SoyBaseE_val: 9.00E-133ISS

Expression Patterns of Glyma07g03240
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g03240 not represented in the dataset
Glyma07g03240 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g03240
ParalogEvidenceComments
Glyma08g22860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g03240 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g028700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g03240
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g03240
>Glyma07g03240.1   sequence type=CDS   gene model=Glyma07g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCCAACTCGACCCTCCACTCACCCACCACTCCCAACACCACCTTCGTCCAAGCCAACCCTTCCAACTTCCGCGCCGTCGTCCAGAAGCTCACCGGCGCCTCCGATGACCCCTCCGCCCATAAACTCCCCCTCACTCTCCCCACGCGCCTCGCGGCAGCGCAGTCCCACCGCCCCGCCTCCGCCGGCGAGGTGATCGGCCCCAAGAAGCCGAACTTCAAGCTCCACGAGCGCCGCAACGCCGCCGCCAAGAGGCTGGAGCTCCCCATCGACACAGCCATGAGCATGATGATGATGAGCGTCTCGCCCACGTCCTCGCTGGTTCGAAGCAGAACAACGACGACAACGTTGGTAGCTTCGCCGGTTTCTCCACTGGAGTTGTTTCTGGCGCGTGCTAGCCCACGCACGCCGCACGAGGAGGAAGAAGAGAGAGCGATAGCGGAGAAAGGGTTCTACTTGCACCCTTCCCCTCGAGCTTCTCAACCTCCTGAGCTTTTGCCACTCTTCCCTTTGCATTCTCCCACTCACAACCACAACCACAATCACACCACCAATTCACCATCAATTCCTAATTAA
Predicted protein sequences of Glyma07g03240
>Glyma07g03240.1   sequence type=predicted peptide   gene model=Glyma07g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASNSTLHSPTTPNTTFVQANPSNFRAVVQKLTGASDDPSAHKLPLTLPTRLAAAQSHRPASAGEVIGPKKPNFKLHERRNAAAKRLELPIDTAMSMMMMSVSPTSSLVRSRTTTTTLVASPVSPLELFLARASPRTPHEEEEERAIAEKGFYLHPSPRASQPPELLPLFPLHSPTHNHNHNHTTNSPSIPN*






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