SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G80460 | AT | Annotation by Michelle Graham. TAIR10: Actin-like ATPase superfamily protein | chr1:30246960-30249055 REVERSE LENGTH=522 | SoyBase | E_val: 0 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol-3-phosphate metabolic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0010188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to microbial phytotoxin | SoyBase | N/A | ISS |
| GO:0019563 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycerol catabolic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0080167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to karrikin | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004370 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glycerol kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| GO:0019200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate kinase activity | SoyBase | N/A | ISS |
| KOG2517 | KOG | Ribulose kinase and related carbohydrate kinases | JGI | ISS | |
| PTHR10196 | Panther | XYLULOSE KINASE | JGI | ISS | |
| PTHR10196:SF9 | Panther | SUGAR KINASE-RELATED | JGI | ISS | |
| PF00370 | PFAM | FGGY family of carbohydrate kinases, N-terminal domain | JGI | ISS | |
| PF02782 | PFAM | FGGY family of carbohydrate kinases, C-terminal domain | JGI | ISS | |
| UniRef100_I1KGY8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGY8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6RUF8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glycerol kinase n=1 Tax=Glycine max RepID=Q6RUF8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g03230 not represented in the dataset |
Glyma07g03230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g22871 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g028600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g03230.1 sequence type=CDS gene model=Glyma07g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAAAGAGGATGTGTTTGTTGGCGCGATCGACCAAGGAACGAGCAGCAGCAGGTTCATAATATACGACGCGAAGACTGGAGTAGTAGGATGCCACCACGTGGAGTTCACCCAGTTCTACCCGCAAGCCGGGTGGGTGGAGCATGACCCCATGGAGATCTTGGAGAGTGTGAAGGTGTGCGTGGCCAAGGCCGTCGATAAGGCCACCGCTGATGGCTTCAACGTCGATAAAGGCTTGAAGGCCATTGGTCTCACCAATCAGAGAGAGACCACTCTCCTCTGGAGCAAATCCACCGGCCTCCCTCTTCACAACGCCATTGTTTGGATGGATGCTCGCACTTCTTCCATTTGCAGGAGATTGGAAAAGGAGTTATCTGGCGGTAGAAACCATTTTGTGGAGAGTTGTGGCTTGCCTATTAGCACATACTTCAGTGCTTTGAAGCTGCTGTGGTTGATGGAAAATGTAGATGCCGTAAAGGAGGCCATAAAGAAAAAGGATGCGCTGTTTGGAACTATTGACACTTGGTTGATATGGAATCTAACTGGTGGGGTGAATGGGGGATTGCATGTTACCGATGTTTCAAATGCATCTCGTACAATGCTCATGAATCTAAAAACCCTTGACTGGGATGCATCTACCTTAAAAACCCTTAATATTCCTGCTGAAATTTTGCCTAATATTGTTAGTAATGCCGAAATTATAGGAGAGGTTGGGTCTGGATGGCCAATTGCTGGTGTCCCTATTGCTGGATGTTTAGGGGATCAACATGCTGCAATGTTAGGACAATCATGCCGTAAAGGGGAGGCTAAGAGCACTTATGGCACAGGTGCTTTCATACTACTAAATACTGGTGAAGGGATAATTCAATCGAAGCACGGTCTTTTATCCACTATAGCTTTCAAGCTTGGCCCAAAAGCTCCAACCAATTATGCATTGGAAGGATCAGTTGCTATTGCTGGAGCTGCAGTGCAGTGGCTTAGAGACGGTCTTGGCATCATTTCTAGTGCTGCAGAGATAGAGGAGATGGCATTACAGGTTGAATCCACTGGTGGGGTTTACTTTGTTCCTGCTTTTAATGGATTGTTTGCCCCATGGTGGCGTGAGGATGCTCGCGGGGTTTGTATTGGAATAACAAGGTTTACAAGCAAGGGTCACATTGCCCGAGCTGTGCTTGAGAGCATGTGTTTCCAAGTGAAAGATGTCTTGGATTCAATGCATAAAGATTCAGGAGAAAGTGAATCCCAAAAAACAGAGTTTTTGCTTAGAGTGGATGGTGGGGCAACTGTAAACAACCTGCTGATGCAGATTCAGGCAGATTTGGTGGGATGTCCAGTAATTAGACCTGCTGACATAGAGACAACAGCACTTGGAGCAGCCTATGCTGCCGGATTAGCTACTGGGATTTGGAAAGAAGATTTTATTTTCAATACTGAGGAGAAGTTGAAGAATGCTAGAGTTTTCCGTCCTGTAATGACTGAGGAAGTAAGGAAAAAGAAAGTTGACTCTTGGTGCAAAGCTGTTAGTAAAACTTTCGACTTAGCTGATCTTGCTCTTTGA
>Glyma07g03230.1 sequence type=predicted peptide gene model=Glyma07g03230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSKEDVFVGAIDQGTSSSRFIIYDAKTGVVGCHHVEFTQFYPQAGWVEHDPMEILESVKVCVAKAVDKATADGFNVDKGLKAIGLTNQRETTLLWSKSTGLPLHNAIVWMDARTSSICRRLEKELSGGRNHFVESCGLPISTYFSALKLLWLMENVDAVKEAIKKKDALFGTIDTWLIWNLTGGVNGGLHVTDVSNASRTMLMNLKTLDWDASTLKTLNIPAEILPNIVSNAEIIGEVGSGWPIAGVPIAGCLGDQHAAMLGQSCRKGEAKSTYGTGAFILLNTGEGIIQSKHGLLSTIAFKLGPKAPTNYALEGSVAIAGAAVQWLRDGLGIISSAAEIEEMALQVESTGGVYFVPAFNGLFAPWWREDARGVCIGITRFTSKGHIARAVLESMCFQVKDVLDSMHKDSGESESQKTEFLLRVDGGATVNNLLMQIQADLVGCPVIRPADIETTALGAAYAAGLATGIWKEDFIFNTEEKLKNARVFRPVMTEEVRKKKVDSWCKAVSKTFDLADLAL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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