SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27030 | AT | Annotation by Michelle Graham. TAIR10: TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108 | SoyBase | E_val: 0 | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0266 | KOG | WD40 repeat-containing protein | JGI | ISS | |
| PTHR19932 | Panther | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN | JGI | ISS | |
| PTHR19932:SF11 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF52 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_Q8H6S5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CTV.2 n=1 Tax=Citrus trifoliata RepID=Q8H6S5_PONTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002338096 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002338096 related cluster n=1 Tax=unknown RepID=UPI0002338096 | SoyBase | E_val: 0 | ISS |
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Glyma07g03180 not represented in the dataset |
Glyma07g03180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g22910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g028000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g03180.2 sequence type=transcript gene model=Glyma07g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGGGGAATCATCCACTGCTGAGTTGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTACCAAGGATTTCGTAAGCGATCTTTGGGTGTCGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCTTGTCGCGCACACTAGAGAATTCTTTATATGATGCATCAAGAGCATCTGAAGCCTTGACAAAGCCTATAATTAATCCAATTTCTGCTGCTGCCGCTGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCTAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTACTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAGCCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAAAATGACTCATATGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTTAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTCTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTTCTGGGAGAACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAGCTCGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGACTCATCTGCACCAATATCCTATGCAACTTTCTCATGTGATAGCCAGCTGGTATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGTTCCAACACACAACCACTTGTAATCGCTGCACACCCTCAAGAACCAAATCAGTTTGCTGTCGGACTGTCTGATGGTGGAGTTCATGTTTTTGAACCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCCCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTGCTTCAGTTGGACCTTCTCCAGATCAAGCTCAAAGATGATCCATGTCAGCCGAAGACAAGTTTCTTTTACATACTTGGCTTGCTGGCCATTTTAAGAACTAAATTTGTACTTAAGTTAATGCAGGGCACTCTCCAATTCAGTTGATCCAGCTAAGTTAAATCCATCAATCGTACATGCCAAAAGTTTGGAGCAACTTCTTTGGTTGAAGACCAAAATCACATTGTAATTTGCCAATAGATGTGAAAAATTCTTTTAAAGTTTAATGCTAAGATGATGTACAAGTCCTTTTGAGTACTTTCAAGTTGTTTTTGGCTATCTAATTAGATTGGTTGATCCTAACTTGTTGCCTTTTGTGAGTTCCATTTCAGCCTTACTGTACTATTCTTATCTGCATCTTCATGTTTCCCATATTTTCTATATAATTTTTGAAAAACAAATCGTCAATTTGGTTCCTAAAGTATAGTTCCCTCCTTAATAGTCCTTACCTTGGCATGATA
>Glyma07g03180.1 sequence type=CDS gene model=Glyma07g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCTCTCAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAGGAGACTGTGCACAAGCTTGAGCAGGAGTCAGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCACAATGGCAATTGGGATGAGGTGGAGAAATACCTCTCTGGTTTCACAAAGGTGGATGATAACAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCTTTAGATAAGCATGACCGGTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAACGAAGAATTGTTCAAGGAAATCACGCAGCTTCTGACATTGGAAAATTTTAGGGAAAATGAACAATTGTCAAAGTATGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAACTGCAATTTCCCAACCTTAAAAACTCAAGGTTACGGACTCTCATCAATCAAAGCCTGAATTGGCAGCATCAACTTTGCAAGAATCCACGGCCAAATCCCGACATAAAAACTCTTTTTGTGGATCACTCATGTGGGCAACCAAATGGTGCTCGAGCTCCTTCACCTGCTAATAACCCGCTACTAGGTGCCTTACCAAAGGCTGGAGGATTTCCTCCACTTGGTGCACATGGGCCTTTTCAGCCTACTCCAGCACCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATGCTGCAGTTTCTGGAGGTGGAGCTATAGGTCTTGGTGCTCCATCTATGCCTGCTGCTTTGAAGCATCCTAGGACCCCCCCAACTAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATATCAGATGAGGTGAATCTTCCTGTCAATGTGTTGTCAGCAACATTCCCTGGTCATGGTCAACATAGTCAAGCTTTTAATGCACCTGATGACATACCTAAGACTGTCGTACGAACTCTTAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAATTCAACAATCTTTGCTTCTTGTTGGTACAAATGTGGGGGACATTGCTTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAATTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCGGCTCTTGTCAAAGATCCGGGTGTTTCTGTGAATCGTGTGATTTGGAGTCCTGATGGTGCTTTGTTTGGAGTCGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAATACGACAGCACCTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCATCCAAATAAGCAACTATGTGTGATAACTTGTGGTGATGATAAAACCATTAAGGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGAGCTGTTAAAAGGACTTACCAAGGATTTCGTAAGCGATCTTTGGGTGTCGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCTTGTCGCGCACACTAGAGAATTCTTTATATGATGCATCAAGAGCATCTGAAGCCTTGACAAAGCCTATAATTAATCCAATTTCTGCTGCTGCCGCTGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCTAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTACTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAGCCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAAAATGACTCATATGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTTAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTCTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTTCTGGGAGAACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAGCTCGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGACTCATCTGCACCAATATCCTATGCAACTTTCTCATGTGATAGCCAGCTGGTATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGTTCCAACACACAACCACTTGTAATCGCTGCACACCCTCAAGAACCAAATCAGTTTGCTGTCGGACTGTCTGATGGTGGAGTTCATGTTTTTGAACCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCCCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTGCTTCAGTTGGACCTTCTCCAGATCAAGCTCAAAGATGA >Glyma07g03180.2 sequence type=CDS gene model=Glyma07g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGAATCATCCACTGCTGAGTTGGAATGAAAGTGAAGGAGCTGTTAAAAGGACTTACCAAGGATTTCGTAAGCGATCTTTGGGTGTCGTGCAATTTGATACTACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAATTCTGGGATATGGATAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCGCGTATTCGCTTCAACAAGGATGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGGGATGGTATTCGCTTGTCGCGCACACTAGAGAATTCTTTATATGATGCATCAAGAGCATCTGAAGCCTTGACAAAGCCTATAATTAATCCAATTTCTGCTGCTGCCGCTGCTGCAACCAGTGCTGCACTGGCAGAGAGGGCTTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATACCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCTAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAACGAACAATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGTAACCAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTACTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGGCCACTGCTACCTTGCAGCCTCAGTTGTGGCAACCATCGAGTGGCATCCTGATGACAAATGACATTGCTGATAGCAATCCTGAGGATGCTGTACCCTGCTTTGCGTTGTCCAAAAATGACTCATATGTAATGTCTGCATCAGGAGGGAAGATATCTCTGTTTAATATGATGACTTTTAAGACTATGACAACTTTCATGCCTCCACCACCTGCGGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATAATAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCAGATGCTCAGATTTGTGTCTGGAATACTGATGGATGGGAAAAGCAGAAGTCTAGATTCTTGCAGCTTCCTTCTGGGAGAACACCACCGGCACAGTCAGATACCCGTGTACAGTTTCATCAAGATCAAATACAGTTCTTGGTTGTACATGAAACTCAGCTCGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCGCGAGACTCATCTGCACCAATATCCTATGCAACTTTCTCATGTGATAGCCAGCTGGTATATGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAACCTCAGATTACGTTGTCGGATCAATCCTTCTTCATATCTTCCTGCAAGTGTCAGTTCCAACACACAACCACTTGTAATCGCTGCACACCCTCAAGAACCAAATCAGTTTGCTGTCGGACTGTCTGATGGTGGAGTTCATGTTTTTGAACCCCTTGAATCTGAAGGCAAGTGGGGTGTGCCTCCCCCGATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTGCTTCAGTTGGACCTTCTCCAGATCAAGCTCAAAGATGA
>Glyma07g03180.1 sequence type=predicted peptide gene model=Glyma07g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQHSQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPIQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLSRTLENSLYDASRASEALTKPIINPISAAAAAATSAALAERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHNKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPSGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVYASFLDATICVFSASNLRLRCRINPSSYLPASVSSNTQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAASVGPSPDQAQR* >Glyma07g03180.2 sequence type=predicted peptide gene model=Glyma07g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNHPLLSWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLSRTLENSLYDASRASEALTKPIINPISAAAAAATSAALAERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHNKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPSGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVYASFLDATICVFSASNLRLRCRINPSSYLPASVSSNTQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAASVGPSPDQAQR*
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