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Report for Sequence Feature Glyma07g02891

Feature Type:gene_model
Chromosome:Gm07
Start:1969654
stop:1972268
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g02891
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G15870AT Annotation by Michelle Graham. TAIR10: Mitochondrial glycoprotein family protein | chr1:5457153-5458245 FORWARD LENGTH=242 SoyBaseE_val: 7.00E-50ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005759GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR10826Panther COMPLEMENT COMPONENT 1 JGI ISS
PTHR10826:SF1Panther COMPLEMENT COMPONENT 1, Q SUBCOMPONENT BINDING PROTEIN RELATED JGI ISS
PF02330PFAM Mitochondrial glycoprotein JGI ISS
UniRef100_G7JD84UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial acidic protein MAM33 n=1 Tax=Medicago truncatula RepID=G7JD84_MEDTR SoyBaseE_val: 9.00E-67ISS
UniRef100_I1KGV6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KGV6_SOYBN SoyBaseE_val: 3.00E-100ISS

Expression Patterns of Glyma07g02891
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g02891 not represented in the dataset
Glyma07g02891 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g02891
ParalogEvidenceComments
Glyma08g23200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g02891 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma07g02891
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g02891
>Glyma07g02891.1   sequence type=CDS   gene model=Glyma07g02891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTCGGGTACTGCTGGCAGATTTAGTTCATGTGTTTAAAGCGTACTTAGAAAAAACCCCTAACCCTAACACACCAATTTCAGCATCAACCATGCATTTCTCGAACAAGTTACATATCCGAGATGCGCAAATCAGCTTTCGAGACTCCTCCGCAACGAGATTCAGTACGAGCTCCAATCCTTTCCTCCCAACAACACAATACGCAGAAGAAGACATTAAACTTGAAGTCACCATGTTTGGTGGAGCTGTTCCTGCTCCAACTCCAACTCCAAATGGTGGTGTAGTTAATTCTGATGAAATGCAGATGCACATTACTGTCATTGTCACCATTTCCAAGGGAGAAGGTTGCGTGTTGGAAATCATGTGCTCTGCTTGGCCTGACAGTATAGAGATAAAAAGGTTGTTCATTCGTGCAAATGAGAAAATAATAGCTGAGCCCTATGCTGGTCCTGAATTCATGGAATTGGATGATGAGCTGCAATACAGACTTTATGATTTCTTGGAAGTGAGGGGTATAAATGATGAACTCGCTTGTTTCTTGCATCAGTACATGAAAAACAAGGATAAAGCGGAGCTCATAGGATGGATGAAAAGGGTTAAATCTTTTATTGAAAGGAAATAA
Predicted protein sequences of Glyma07g02891
>Glyma07g02891.1   sequence type=predicted peptide   gene model=Glyma07g02891   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPRVLLADLVHVFKAYLEKTPNPNTPISASTMHFSNKLHIRDAQISFRDSSATRFSTSSNPFLPTTQYAEEDIKLEVTMFGGAVPAPTPTPNGGVVNSDEMQMHITVIVTISKGEGCVLEIMCSAWPDSIEIKRLFIRANEKIIAEPYAGPEFMELDDELQYRLYDFLEVRGINDELACFLHQYMKNKDKAELIGWMKRVKSFIERK*






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