Glyma07g02861 - SoyBase

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Report for Sequence Feature Glyma07g02861

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1949017
stop:	1949720
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02861

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15880	AT	Annotation by Michelle Graham. TAIR10: golgi snare 11 \| chr1:5458718-5460089 REVERSE LENGTH=223	SoyBase	E_val: 1.00E-40	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010351	GO-bp	Annotation by Michelle Graham. GO Biological Process: lithium ion transport	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000149	GO-mf	Annotation by Michelle Graham. GO Molecular Function: SNARE binding	SoyBase	N/A	ISS
PTHR21094	Panther	GOS-28 SNARE- RELATED	JGI		ISS
PF12352	PFAM	Snare region anchored in the vesicle membrane C-terminus	JGI		ISS
UniRef100_I1KVK0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Golgi SNAP receptor complex member 1 n=3 Tax=Glycine max RepID=I1KVK0_SOYBN	SoyBase	E_val: 9.00E-43	ISS
UniRef100_I1KVK0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Golgi SNAP receptor complex member 1 n=3 Tax=Glycine max RepID=I1KVK0_SOYBN	SoyBase	E_val: 9.00E-43	ISS

Expression Patterns of Glyma07g02861

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g02861 not represented in the dataset	Glyma07g02861 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g02861 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g025100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02861

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g02861

Limit To All Plant Sequences

>Glyma07g02861.1   sequence type=CDS   gene model=Glyma07g02861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAATGTAATTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCAACATTTGGCGGTATCAATTCAAAGCTCGGCAATGTGAGCAGTCGCCTCCCAACGGTAAATAACATACTTTCAGCAATAAAGAGAAAAAAGTCAATGGATACCATTAGACTTTCCCTTGTTGCAGCCGTATGCACATTTCTCATTTTCATGTACTGGCTATCCAAGTGA

Predicted protein sequences of Glyma07g02861

Limit To All Plant Sequences

>Glyma07g02861.1   sequence type=predicted peptide   gene model=Glyma07g02861   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNVISQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNNILSAIKRKKSMDTIRLSLVAAVCTFLIFMYWLSK*

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