Glyma07g02680 - SoyBase

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Report for Sequence Feature Glyma07g02680

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1814283
stop:	1822590
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80830	AT	Annotation by Michelle Graham. TAIR10: natural resistance-associated macrophage protein 1 \| chr1:30373066-30375644 REVERSE LENGTH=532	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006828	GO-bp	Annotation by Michelle Graham. GO Biological Process: manganese ion transport	SoyBase	N/A	ISS
GO:0006875	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis	SoyBase	N/A	ISS
GO:0015691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cadmium ion transport	SoyBase	N/A	ISS
GO:0015692	GO-bp	Annotation by Michelle Graham. GO Biological Process: lead ion transport	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0034755	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transmembrane transport	SoyBase	N/A	ISS
GO:0055071	GO-bp	Annotation by Michelle Graham. GO Biological Process: manganese ion homeostasis	SoyBase	N/A	ISS
GO:0070574	GO-bp	Annotation by Michelle Graham. GO Biological Process: cadmium ion transmembrane transport	SoyBase	N/A	ISS
GO:0071421	GO-bp	Annotation by Michelle Graham. GO Biological Process: manganese ion transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005381	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005384	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015086	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cadmium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG1291	KOG	Mn2+ and Fe2+ transporters of the NRAMP family	JGI		ISS
PTHR11706	Panther	MANGANESE TRANSPORTER	JGI		ISS
PTHR11706:SF10	Panther	METAL TRANSPORTER NRAMP (NRAMP)	JGI		ISS
PF01566	PFAM	Natural resistance-associated macrophage protein	JGI		ISS
UniRef100_B9N9Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nramp transporter n=1 Tax=Populus trichocarpa RepID=B9N9Y7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KVL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KVL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g02680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g02680

Paralog	Evidence	Comments
Glyma08g23320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g02680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g023600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g02680

Limit To All Plant Sequences

>Glyma07g02680.3   sequence type=transcript   gene model=Glyma07g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAATTCTTGGGACATTCATTCCTGGACAATGGCTGCAGTTTGCTAAGTTCAGAAGAGTTTTGTATTGCAAAAGGTGGACTGGACGGTGTACGCAATCATTTTTTGGGTGCAGAAATTAAGGAGTAGAGAATATGACTGTGACAGGTTCATCATCTGGGCAACCTCAATTCATTGCCAGCACCGGTGGTAACCGGAACTTCTCGAATGCACCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTACCTGATACAACAGGCTGGAAAAACCTATTTGCATACGTGGGACCTGGATTTCTAGTTTCCATTGCATATATCGACCCGGGAAACTTTGAGACAGATCTTCAATCAGGAGCGCAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCGTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTATTCCTCCACTCAGCACTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCCTGTAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTATGCAATTCTTCAAATTTAAGTGTTGAAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATTGTGTATTGATAAATCCCGTGTATGATACAATTGACCTTGTGAGATTATCATTTGGGCTATATGTGCTGAAGTCCTTCTGTATCTGCTGATCAGATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCTCGATCTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCATGTCCACTTAAAAATTGTTACTAAGGTGTTTCTCGGGATATTGGGATTTTCGGGTGTGGCACTATATATGGGAGGCATTGCGTATCTAGTGTTTCGCAAAAATAAAAAAACTACACACATTTTGGCATTTAGAACATTGGAAGAACAACAAGTGGCAAATGAACAAGGTGATATATCAATTTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTCCAGCAGAAATTGATTGAGAAATATCTCAATAAGGAAGATTAACTACAGTCCTAGCAAAGGTTTCATCAAGGATATATAATATATAATAATATCCAATTTTATGTTAATTTCTAAAAATTGAACATATGCAAAAGGGAACATTGCTCGGTGCAAATTAAGTACCAAGCACATCACCTCACATATATGTATAAAGTTACTATCAGTGCGAATGTAGAAAATGGGTGAGATCAATTGTAATGAGATGGTAAAAGCTATGGAACTATAAATAGGTTGTGTGTATCTAAGTGTAGGTAACATAATTTTATAGAAGATAAGTATCTCTTTGGAATATTGATGAGCAGGACTTCTGGTATCACTTGGCTGGAATTGCTAAAGCTTTTTAATTATTCATTTAGTGCTTATATTGATAGCCTTTTTCTTGAAATTTGGGTGGAAGGACTGTGTTATCCTTTCCACCCCTCATATTGTCACTTGTTGTACCACATTGCTCATAATCAACAGAAAAAACATTTTTCCTCTC

Coding sequences of Glyma07g02680

Limit To All Plant Sequences

>Glyma07g02680.2   sequence type=CDS   gene model=Glyma07g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGTGACAGGTTCATCATCTGGGCAACCTCAATTCATTGCCAGCACCGGTGGTAACCGGAACTTCTCGAATGCACCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTACCTGATACAACAGGCTGGAAAAACCTATTTGCATACGTGGGACCTGGATTTCTAGTTTCCATTGCATATATCGACCCGGGAAACTTTGAGACAGATCTTCAATCAGGAGCGCAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCGTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTATTCCTCCACTCAGCACTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCCTGTAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTATGCAATTCTTCAAATTTAAGTGTTGAAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATGATCTTATCATTTGAGCTTCCTTTTGCTTTGATTCCACTCCTCAAGTTCACTAGCAGCAAAATCAAGATGGGAGAACATGTCAACTCAATCTCGATCTCGGCTGTTACTTGGATCATTGGTTCCCTCATCATGGGCATAAATATATACTATTTATTGACTAGCTTTGTCAAATTGCTTCTGCATGTCCACTTAAAAATTGTTACTAAGGTGTTTCTCGGGATATTGGGATTTTCGGGTGTGGCACTATATATGGGAGGCATTGCGTATCTAGTGTTTCGCAAAAATAAAAAAACTACACACATTTTGGCATTTAGAACATTGGAAGAACAACAAGTGGCAAATGAACAAGGTGATATATCAATTTATAGTCTCCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAAAAGGAGTCCAGCAGAAATTGATTGA

>Glyma07g02680.3   sequence type=CDS   gene model=Glyma07g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGTGACAGGTTCATCATCTGGGCAACCTCAATTCATTGCCAGCACCGGTGGTAACCGGAACTTCTCGAATGCACCCTTGATTGAAAACTCAGATACTGATCAAATTGTTGTACCTGATACAACAGGCTGGAAAAACCTATTTGCATACGTGGGACCTGGATTTCTAGTTTCCATTGCATATATCGACCCGGGAAACTTTGAGACAGATCTTCAATCAGGAGCGCAATATAAATATGAGTTACTTTGGATCATATTGGTGGCGTCATGTGCTGCACTTCTAATTCAAACAATGGCAGCTAATCTTGGGGTTGTCACTGGAATGCACCTAGCAGAGCATTGTAGAGCTGAATATTCTCGGGTGCCCAACTTTATCCTTTGGGTGATTGCTGAAATTGCCATAGTGGCGTGTGACATTCCTGAAGTAATTGGGACAGCCTTTGCATTGAACATGCTCTTCAACATACCAGTTTGGGTTGGTGTTCTTCTGACAGGATTCAGTACATTGATCCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTCATTGCATTTCTAGTATTCACAATTGCTGGTTGCTTTATGGCTGAGCTTGGATATGCAAAGCCGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCCCACAATCTATTCCTCCACTCAGCACTGGTGCTTTCCAGGAAAATACCGCGATCAGTTCGTGGAATCAAAGAGGCCTGTAGATTTTACATGATAGAAAGTGCCTTTGCTCTTACGGTGGCCTTCCTCATAAATATTTCTGTTATTTCTGTAAGTGGTGCAGTATGCAATTCTTCAAATTTAAGTGTTGAAGATCAGAATAGCTGTCAGGATTTGGATTTGAACAAGGCCTCCTTTTTATTAAGAAATGTCTTGGGCAAATGGAGCTCAAAACTATTTGCAATTGCTTTACTTGCCTCAGGTCAAAGTTCTACCATAACAGGAACATATGCAGGACAATACGTCATGCAGGGATTTCTTGATTTGCGACTGAAGTCATGGATTCGGAATCTGCTAACTCGTTGCTTAGCCATTGTTCCTAGTTTGATTGTTGCACTCATTGGTGGCTCTGCTGGAGCTGGGGAGCTCATCATAATTGCATCGATTGTGTATTGA

Predicted protein sequences of Glyma07g02680

Limit To All Plant Sequences

>Glyma07g02680.2   sequence type=predicted peptide   gene model=Glyma07g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTGSSSGQPQFIASTGGNRNFSNAPLIENSDTDQIVVPDTTGWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWVGVLLTGFSTLILLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVAGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSVEDQNSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASMILSFELPFALIPLLKFTSSKIKMGEHVNSISISAVTWIIGSLIMGINIYYLLTSFVKLLLHVHLKIVTKVFLGILGFSGVALYMGGIAYLVFRKNKKTTHILAFRTLEEQQVANEQGDISIYSLPREDIVSMQLPQKRSPAEID*

>Glyma07g02680.3   sequence type=predicted peptide   gene model=Glyma07g02680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVTGSSSGQPQFIASTGGNRNFSNAPLIENSDTDQIVVPDTTGWKNLFAYVGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALLIQTMAANLGVVTGMHLAEHCRAEYSRVPNFILWVIAEIAIVACDIPEVIGTAFALNMLFNIPVWVGVLLTGFSTLILLALQQYGVRKLEFFIAFLVFTIAGCFMAELGYAKPVAKEVVAGLFVPKLQGHGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSVRGIKEACRFYMIESAFALTVAFLINISVISVSGAVCNSSNLSVEDQNSCQDLDLNKASFLLRNVLGKWSSKLFAIALLASGQSSTITGTYAGQYVMQGFLDLRLKSWIRNLLTRCLAIVPSLIVALIGGSAGAGELIIIASIVY*

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