Glyma07g02500 - SoyBase

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Report for Sequence Feature Glyma07g02500

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1702523
stop:	1703916
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15350	AT	Annotation by Michelle Graham. TAIR10: early nodulin-like protein 17 \| chr5:4985184-4986154 REVERSE LENGTH=172	SoyBase	E_val: 1.00E-34	ISS
GO:0006084	GO-bp	Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0016132	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0052541	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process	SoyBase	N/A	ISS
GO:0052546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02298	PFAM	Plastocyanin-like domain	JGI		ISS
UniRef100_B8Y8A0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Blue copper-like protein n=1 Tax=Gossypium hirsutum RepID=B8Y8A0_GOSHI	SoyBase	E_val: 2.00E-70	ISS
UniRef100_C6SVM1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SVM1_SOYBN	SoyBase	E_val: 2.00E-122	ISS

Expression Patterns of Glyma07g02500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g02500 not represented in the dataset	Glyma07g02500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g02500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g022000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g02500

Limit To All Plant Sequences

>Glyma07g02500.1   sequence type=CDS   gene model=Glyma07g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGCTCATGGTCATGGCAGCTCACATGTGCCCTCTTGCTACTCTTCTCCGCCGTAGTCACCGCCACTGACCACATTGTGGGTGCGAATCGTGGCTGGAACCCTGGCTTTAACTACACTCTTTGGGCCAACAACCACACTTTCTATGTTGGCGATCTTATCTCATTCAGGTACCAAAAGAACCAATACAATGTGTTTGAGGTGAACCAAACTGGGTATGACAACTGCACTACAGAAGGGGCAGTGGGGAATTGGAGCAGTGGGAAGGATTTCATACCCCTTAACAAGGCCAAGAGATATTACTTCATTTGTGGCAATGGCCAATGCTTCAGTGGAATGAAGGTTTCCGTTGTGGTTCATCCTCTTCCTCCTCCTCCCACCTCTGCAGTTGCTGCTCAACATTCATCGCCAAAGTCTGCTTCTCCTGTGCTCTTAAAACGAGGATTTCGCTCACTGTTGGTGTCTACTGTTTCAGCTTGCTTTGGAATTGTTTGGATTTATCACTTGTAG

Predicted protein sequences of Glyma07g02500

Limit To All Plant Sequences

>Glyma07g02500.1   sequence type=predicted peptide   gene model=Glyma07g02500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSWSWQLTCALLLLFSAVVTATDHIVGANRGWNPGFNYTLWANNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTTEGAVGNWSSGKDFIPLNKAKRYYFICGNGQCFSGMKVSVVVHPLPPPPTSAVAAQHSSPKSASPVLLKRGFRSLLVSTVSACFGIVWIYHL*

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