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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G48930 | AT | Annotation by Michelle Graham. TAIR10: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | chr5:19836654-19838092 REVERSE LENGTH=433 | SoyBase | E_val: 0 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009809 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0010252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin homeostasis | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| GO:0047172 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: shikimate O-hydroxycinnamoyltransferase activity | SoyBase | N/A | ISS |
| GO:0047205 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: quinate O-hydroxycinnamoyltransferase activity | SoyBase | N/A | ISS |
| PF02458 | PFAM | Transferase family | JGI | ISS | |
| UniRef100_B6DQK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Shikimate O-hydroxycinnamoyl transferase n=1 Tax=Trifolium pratense RepID=B6DQK4_TRIPR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KGR3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGR3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g02460 not represented in the dataset |
Glyma07g02460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g23560 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g021600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g02460.2 sequence type=transcript gene model=Glyma07g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAACTTTATGTTAAACTAGTTATCACTCCCGACATTGCCTGAGACAAAATATATAAACCACGAGTCCAACAAAAGTTAACTTCTGACTGTAACATATACAAAGAAAAAAAAAAAAAAGAAACCTTGATAGAAAAACAACCCTTTTGATCAATCAAAATTATGTTCATAAACATGAAGTTGGACTTTTTATGTGTATCGGGTACCTTCCACCTGCGAAGACCCTTCACCATAATGGTAAATTTTTCAGAACCAGATACAATATTGTTGACATGAGAACGAAAATTCATCTTTTTGGGAGACAAAGAAGAAAACCTAGGCCTCAATGAAACTCAATTTTTGCTAACTTTTGGGTGTTCCGTGGTTGTGATGACTTGTGAAGTATCTGGAGAAGACTACTTGTCTTTTTTCGCCAAAGCCAAAACCACTTTGGTAACAACAATGTTTGGTAAATGCGAAACCCAAGACAAATACTTTAGATTTTTGTAGGGAAAATAGATAAATATCAGGTCTCGTTTGTTTCGTTTTATATATAAAGCACAAGTTCAGGTAAAGAAGGAATAATTCTCTAAAGCTATAATTAGGAAGGCTGAAGCAATCGAGGTTAAAGTCTTCTCCAATAAAATCAGGAATTAAATGTCATGAAATGAGTCCATGAGCGTAAATAGCACATAAGTGCGTAGCCTCAAATGGGTTTGTAGTGAGGCGTGGCGTCATTCGTAGCGACTTCCTGATGTCAGAACTGAAAGAAACTATATAGAGGAATTAACAACAGTGAAGAGTGAAGAATAACAGCAGTCCATGATAATCAGCACATATCACCCACCAAACGCAAAGCAATGGGTTCTCTTCCAGAGGATAAGAGTTGGTGAATGAAATTGAAAGGCAGGTCCCCGTCTCACCAACTTACATGAGTGGTCAATGACTTGTCTCAATGAGGCGGCGTGTTGTTATTGGGTGGATGCAGTTGGCGGGGTTGGTGAGTGACTCAACCCAACCCCTTCTTACTTTACTTTTGCTTAAAAAGTAGGAGTCCACGCATTCGAAAGCGTTCGCTCTCACACCCAATCCCTACCCAGACAACTCCCAACTTCTCTCAGTACTCTCATCAGGATCCGGTAATGTTCCTCCTCCTCCTCTTTCCTCTAACTCATCTCGATCAATGTTTATCATGCATATGAAACCTTCGTTCTTGTAAGCCTTTTAGCCTTTCCATTTTCAAATACATCTTTTTCCTTCCGTTTATGAAACTACACTTCTCCATCTTTGACTCCATATACTTCATTCCACTAGTTTGTCTTCTGTGTGAGCAGTCGAGCAGAGAGATGATCATCAACGTGAAGGAATCGACGGTGGTGCGGCCGGCGGAGGAGGTGGCGCGGCGGGTGGTGTGGAACTCCAACGTGGACCTGGTGGTCCCCAATTTCCACACGCCCAGTGTATACTTCTATAGGTCCAACGGCACCTCCAACTTTTTCGACGGCAAGGTTCTGAAGGAGGCACTGAGCAAGGTGCTGGTGCCGTTCTACCCAATGGCTGGGCGGCTCCGGCGAGACGAAGACGGTCGCGTGGAGATTGACTGCGACGGTCAGGGGGTGCTCTTCGTCGAGGCCGACACCGGCGCCGTCATCGACGATTTCGGCGACTTCGCTCCCACCCTTGAGCTCCGCCAGCTCATCCCCGCCGTCGATTATTCACAGGGAATAGAAACCTATCCCCTGTTGGTGTTACAGGTAACACATTTCAAATGTGGAGGGGTGTCCCTGGGAGTTGGTATGCAACATCATGTAGCAGATGGAGCCTCTGGTTTGCACTTCATCAATACATGGTCAGATGTGGCTCGTGGCTTGGATGTTTCCATTCCACCATTCATTGATCGTACAATACTTCGTGCTAGAGATCCACCTCGACCTGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAGACTCAACAACCTACTAAACCAGGCTCAGACTCGGATAATGCAGCAGCAGCAGCAGCGGTGTCTATTTTCAGACTCACACGTGAGCAGCTCAACACACTGAAAGCCAAGTCTAAAGAAGATGGCAACACAATCAGCTACAGTTCTTATGAGATGTTGGCGGGTCACGTGTGGAGAAGTGTATGCAAAGCAAGAGCACTTCCTGATGATCAAGAAACCAAATTGTACATTGCAACTGATGGAAGGTCAAGGTTGCAACCTCCTCCCCCACCGGGTTACTTTGGCAATGTGATATTCACAACCACACCTATAGCTGTGGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAATGCATTGTTACGAATGGACAACGATTATTTAAGGTCAGCTCTTGACTATCTAGAGCTGCAACCTGATCTAAAAGCTCTCGTTCGCGGGGCTCATACTTTCAAGTGTCCAAATCTTGGTATCACTAGCTGGACTAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGGCCTATATTCATGGGACCTGGTGGAATTGCATACGAGGGCCTGTCTTTCATAATTCCAAGCTCAACCAATGATGGGAGCTTATCTGTGGCCATAGCTCTTCAGCCCGACCATATGAAGGTGTTTAAGGATTTCTTGTATGACATTTGAGGAATCATTGGCTGTCAGCCATATGGAACGCCACAATGTTTCTAGGTGGTGTTTTTATCCCCCCCGGTACCTTTTGTTATCTTTAGATGCTTTTGACCAACGGTATGCAACTGTTAATGGGACTCATTTCAGTTTTATATGGACTACATTAAGTGTTATACATTTTTATAATCTGTAAAACATAAACGAACTTTAACAACAGTTAATTTGGTATTACAGTTTGTGCATATGAATTGTTTAAGGATTGTCTGCACAATCTTTTGCTCCTAAATGTAATGCCATAACTGAGGTGTATTTTATCTGTACACATCTGCATTGCATTCTGTGAGGAATTTTTACAATTCTTCTAATTGGAGGAAATTTGAAAGGTAATTGTACAAGCTGGTTTTGTACCAAGATATAGGTTGTTCTTGCTACTTGCACTAGTACTCCAGTAGAAGAAATCCTTCCTTTCTCCTTGTCTAAAGATTTCCCTTGAGTCAGCTTTATGAATAAGGATGAGATTATTGTAAAAAACTGCTCCAACTCTCAAGTTGGTAACTTTGAG
>Glyma07g02460.1 sequence type=CDS gene model=Glyma07g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATCAACGTGAAGGAATCGACGGTGGTGCGGCCGGCGGAGGAGGTGGCGCGGCGGGTGGTGTGGAACTCCAACGTGGACCTGGTGGTCCCCAATTTCCACACGCCCAGTGTATACTTCTATAGGTCCAACGGCACCTCCAACTTTTTCGACGGCAAGGTTCTGAAGGAGGCACTGAGCAAGGTGCTGGTGCCGTTCTACCCAATGGCTGGGCGGCTCCGGCGAGACGAAGACGGTCGCGTGGAGATTGACTGCGACGGTCAGGGGGTGCTCTTCGTCGAGGCCGACACCGGCGCCGTCATCGACGATTTCGGCGACTTCGCTCCCACCCTTGAGCTCCGCCAGCTCATCCCCGCCGTCGATTATTCACAGGGAATAGAAACCTATCCCCTGTTGGTGTTACAGGTAACACATTTCAAATGTGGAGGGGTGTCCCTGGGAGTTGGTATGCAACATCATGTAGCAGATGGAGCCTCTGGTTTGCACTTCATCAATACATGGTCAGATGTGGCTCGTGGCTTGGATGTTTCCATTCCACCATTCATTGATCGTACAATACTTCGTGCTAGAGATCCACCTCGACCTGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAGACTCAACAACCTACTAAACCAGGCTCAGACTCGGATAATGCAGCAGCAGCAGCAGCGGTGTCTATTTTCAGACTCACACGTGAGCAGCTCAACACACTGAAAGCCAAGTCTAAAGAAGATGGCAACACAATCAGCTACAGTTCTTATGAGATGTTGGCGGGTCACGTGTGGAGAAGTGTATGCAAAGCAAGAGCACTTCCTGATGATCAAGAAACCAAATTGTACATTGCAACTGATGGAAGGTCAAGGTTGCAACCTCCTCCCCCACCGGGTTACTTTGGCAATGTGATATTCACAACCACACCTATAGCTGTGGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAATGCATTGTTACGAATGGACAACGATTATTTAAGGTCAGCTCTTGACTATCTAGAGCTGCAACCTGATCTAAAAGCTCTCGTTCGCGGGGCTCATACTTTCAAGTGTCCAAATCTTGGTATCACTAGCTGGACTAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGGCCTATATTCATGGGACCTGGTGGAATTGCATACGAGGGCCTGTCTTTCATAATTCCAAGCTCAACCAATGATGGGAGCTTATCTGTGGCCATAGCTCTTCAGCCCGACCATATGAAGGTGTTTAAGGATTTCTTGTATGACATTTGA >Glyma07g02460.2 sequence type=CDS gene model=Glyma07g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACTACACTTCTCCATCTTTGACTCCATATACTTCATTCCACTAGTTTGTCTTCTGTGTGAGCAGTCGAGCAGAGAGATGATCATCAACGTGAAGGAATCGACGGTGGTGCGGCCGGCGGAGGAGGTGGCGCGGCGGGTGGTGTGGAACTCCAACGTGGACCTGGTGGTCCCCAATTTCCACACGCCCAGTGTATACTTCTATAGGTCCAACGGCACCTCCAACTTTTTCGACGGCAAGGTTCTGAAGGAGGCACTGAGCAAGGTGCTGGTGCCGTTCTACCCAATGGCTGGGCGGCTCCGGCGAGACGAAGACGGTCGCGTGGAGATTGACTGCGACGGTCAGGGGGTGCTCTTCGTCGAGGCCGACACCGGCGCCGTCATCGACGATTTCGGCGACTTCGCTCCCACCCTTGAGCTCCGCCAGCTCATCCCCGCCGTCGATTATTCACAGGGAATAGAAACCTATCCCCTGTTGGTGTTACAGGTAACACATTTCAAATGTGGAGGGGTGTCCCTGGGAGTTGGTATGCAACATCATGTAGCAGATGGAGCCTCTGGTTTGCACTTCATCAATACATGGTCAGATGTGGCTCGTGGCTTGGATGTTTCCATTCCACCATTCATTGATCGTACAATACTTCGTGCTAGAGATCCACCTCGACCTGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAGACTCAACAACCTACTAAACCAGGCTCAGACTCGGATAATGCAGCAGCAGCAGCAGCGGTGTCTATTTTCAGACTCACACGTGAGCAGCTCAACACACTGAAAGCCAAGTCTAAAGAAGATGGCAACACAATCAGCTACAGTTCTTATGAGATGTTGGCGGGTCACGTGTGGAGAAGTGTATGCAAAGCAAGAGCACTTCCTGATGATCAAGAAACCAAATTGTACATTGCAACTGATGGAAGGTCAAGGTTGCAACCTCCTCCCCCACCGGGTTACTTTGGCAATGTGATATTCACAACCACACCTATAGCTGTGGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCAAGCAGAATCCACAATGCATTGTTACGAATGGACAACGATTATTTAAGGTCAGCTCTTGACTATCTAGAGCTGCAACCTGATCTAAAAGCTCTCGTTCGCGGGGCTCATACTTTCAAGTGTCCAAATCTTGGTATCACTAGCTGGACTAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGGCCTATATTCATGGGACCTGGTGGAATTGCATACGAGGGCCTGTCTTTCATAATTCCAAGCTCAACCAATGATGGGAGCTTATCTGTGGCCATAGCTCTTCAGCCCGACCATATGAAGGTGTTTAAGGATTTCTTGTATGACATTTGA
>Glyma07g02460.1 sequence type=predicted peptide gene model=Glyma07g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIINVKESTVVRPAEEVARRVVWNSNVDLVVPNFHTPSVYFYRSNGTSNFFDGKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLELRQLIPAVDYSQGIETYPLLVLQVTHFKCGGVSLGVGMQHHVADGASGLHFINTWSDVARGLDVSIPPFIDRTILRARDPPRPVFDHIEYKPPPAMKTQQPTKPGSDSDNAAAAAAVSIFRLTREQLNTLKAKSKEDGNTISYSSYEMLAGHVWRSVCKARALPDDQETKLYIATDGRSRLQPPPPPGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHNALLRMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWTRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALQPDHMKVFKDFLYDI* >Glyma07g02460.2 sequence type=predicted peptide gene model=Glyma07g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLHFSIFDSIYFIPLVCLLCEQSSREMIINVKESTVVRPAEEVARRVVWNSNVDLVVPNFHTPSVYFYRSNGTSNFFDGKVLKEALSKVLVPFYPMAGRLRRDEDGRVEIDCDGQGVLFVEADTGAVIDDFGDFAPTLELRQLIPAVDYSQGIETYPLLVLQVTHFKCGGVSLGVGMQHHVADGASGLHFINTWSDVARGLDVSIPPFIDRTILRARDPPRPVFDHIEYKPPPAMKTQQPTKPGSDSDNAAAAAAVSIFRLTREQLNTLKAKSKEDGNTISYSSYEMLAGHVWRSVCKARALPDDQETKLYIATDGRSRLQPPPPPGYFGNVIFTTTPIAVAGDLMSKPTWYAASRIHNALLRMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWTRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALQPDHMKVFKDFLYDI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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