Glyma07g02400 - SoyBase

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Report for Sequence Feature Glyma07g02400

Feature Type:	gene_model
Chromosome:	Gm07
Start:	1645489
stop:	1648504
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g02400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38620	AT	Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase B1;2 \| chr2:16152551-16153866 FORWARD LENGTH=311	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0000307	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cyclin-dependent protein kinase holoenzyme complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0030332	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin binding	SoyBase	N/A	ISS
KOG0594	KOG	Protein kinase PCTAIRE and related kinases	JGI		ISS
PTHR24056	Panther	CELL DIVISION PROTEIN KINASE	JGI		ISS
PTHR24056:SF101	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1KGQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGQ5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P93321	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cdc2MsD protein n=1 Tax=Medicago sativa RepID=P93321_MEDSA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g02400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g02400 not represented in the dataset	Glyma07g02400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g02400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g021100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g02400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g02400

Limit To All Plant Sequences

>Glyma07g02400.2   sequence type=transcript   gene model=Glyma07g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATAATTAAAAAAAAAAATGAAAAGAGAAAGAGAATTTGAAAAGGAGAGGGCGCGGCTAGATCTGGAAGTGTCCGTTACGTTATAATAGTTGATAAAAATCTGAAATCTGAAATCCTTAGCCCTAATTTGGTCGGAGAAATGGAAAAGTACGAGAAGCTGGAGAAGGTGGGAGAAGGAACATACGGGAAAGTGTACAAGGCTCGGGAGAAGGCGAGTGGGAGCCTGGTGGCTCTGAAGAAGACGCGTCTGGAGATGGACGAGGAGGGTGTCCCTCCCACCGCACTACGCGAGGTGTCTCTCCTTCAGCTTCTCTCCCAATCCATCTACATCGTCCGCCTCCTCTCCGTCGAACACGTCGACAAGGTCCCCAAGTCCCAGAAATCCTCCTCCAACCCCCTCACCAAGCCCATCCTTTACCTTGTTTTCGAGTATCTCGACACCGATCTCAAGAAGTTCATCGATTCCCACCGCAAGGGCCCCAATCCCAGGCCCCTCCCTCCTCCCCTCATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGCGTGGCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCGCAGAACCTTCTCCTTGACCAGCACAAGGGTATTCTTAAGATCGCTGATCTCGGCCTCGGCCGCGCCTTCACCGTCCCTCTCAAGAGCTACACTCACGAGATCGTTACTCTCTGGTACCGTGCCCCCGAGGTTCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAATGTGCCTTCCTTAGGACCTGATGGAGTCGACCTTCTTTCGAAAATGCTCAAGTATAATCCTTCTGAGAGAATATCTGCTAAGGCAGCACTTGATCATCCATACTTTGACAGTCTTGACAAATCTCAATTTTAGTTGAGCCTCTTAGTCAAAAGGTCACTCTTGAAGGGTAGTTCATGGTTGCCATGGTCTTTGTAGGACCCTTGAAGAACTTAATGCTCCTCAAAAGTTGTATTTTCTGTTGAAATTGAAAGGGATAGTCTATGACTATGATATTAACTATCTTAGTGCATAATATCTTATGGTTTTAGGTTGGTTGTATTTTCTGTTGAAATTGAAAGGGATGGTCTATTCTATGACTATACTAGTAACTATCATAGTGCATAATATTTTATGGTTTTAGGTGGCCGTCAGTGATATTTAAAAGGCGATTTTTTTTAATGATTGCGGAGTAAAAACAGACCAC

Coding sequences of Glyma07g02400

Limit To All Plant Sequences

>Glyma07g02400.1   sequence type=CDS   gene model=Glyma07g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGTACGAGAAGCTGGAGAAGGTGGGAGAAGGAACATACGGGAAAGTGTACAAGGCTCGGGAGAAGGCGAGTGGGAGCCTGGTGGCTCTGAAGAAGACGCGTCTGGAGATGGACGAGGAGGGTGTCCCTCCCACCGCACTACGCGAGGTGTCTCTCCTTCAGCTTCTCTCCCAATCCATCTACATCGTCCGCCTCCTCTCCGTCGAACACGTCGACAAGGTCCCCAAGTCCCAGAAATCCTCCTCCAACCCCCTCACCAAGCCCATCCTTTACCTTGTTTTCGAGTATCTCGACACCGATCTCAAGAAGTTCATCGATTCCCACCGCAAGGGCCCCAATCCCAGGCCCCTCCCTCCTCCCCTCATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGCGTGGCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCGCAGAACCTTCTCCTTGACCAGCACAAGGGTATTCTTAAGATCGCTGATCTCGGCCTCGGCCGCGCCTTCACCGTCCCTCTCAAGAGCTACACTCACGAGATCGTTACTCTCTGGTACCGTGCCCCCGAGGTTCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAATGTGCCTTCCTTAGGACCTGATGGAGTCGACCTTCTTTCGAAAATGCTCAAGTATAATCCTTCTGAGAGAATATCTGCTAAGGCAGCACTTGATCATCCATACTTTGACAGTCTTGACAAATCTCAATTTTAG

>Glyma07g02400.2   sequence type=CDS   gene model=Glyma07g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAAGTACGAGAAGCTGGAGAAGGTGGGAGAAGGAACATACGGGAAAGTGTACAAGGCTCGGGAGAAGGCGAGTGGGAGCCTGGTGGCTCTGAAGAAGACGCGTCTGGAGATGGACGAGGAGGGTGTCCCTCCCACCGCACTACGCGAGGTGTCTCTCCTTCAGCTTCTCTCCCAATCCATCTACATCGTCCGCCTCCTCTCCGTCGAACACGTCGACAAGGTCCCCAAGTCCCAGAAATCCTCCTCCAACCCCCTCACCAAGCCCATCCTTTACCTTGTTTTCGAGTATCTCGACACCGATCTCAAGAAGTTCATCGATTCCCACCGCAAGGGCCCCAATCCCAGGCCCCTCCCTCCTCCCCTCATCCAGAGCTTCCTCTTCCAGCTCTGCAAGGGCGTGGCTCACTGCCACAGCCACGGTGTCCTCCACCGCGATCTCAAGCCGCAGAACCTTCTCCTTGACCAGCACAAGGGTATTCTTAAGATCGCTGATCTCGGCCTCGGCCGCGCCTTCACCGTCCCTCTCAAGAGCTACACTCACGAGATCGTTACTCTCTGGTACCGTGCCCCCGAGGTTCTCCTTGGCTCTACCCATTACTCCACTGGGGTTGATATCTGGTCTGTTGGCTGCATCTTTGCCGAAATGGTGAGGAGGCAAGCTTTGTTTCCGGGGGATTCTGAGTTCCAGCAGCTCATTCACATATTCAAGATGTTGGGAACTCCAACAGAGGAGAATTGGCCAGGAGTTACTTCTCTGCGTGATTGGCATGTGTACCCACGCTGGGAACCTCAGAGCTTGGCAAAGAATGTGCCTTCCTTAGGACCTGATGGAGTCGACCTTCTTTCGAAAATGCTCAAGTATAATCCTTCTGAGAGAATATCTGCTAAGGCAGCACTTGATCATCCATACTTTGACAGTCTTGACAAATCTCAATTTTAG

Predicted protein sequences of Glyma07g02400

Limit To All Plant Sequences

>Glyma07g02400.1   sequence type=predicted peptide   gene model=Glyma07g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKYEKLEKVGEGTYGKVYKAREKASGSLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLSVEHVDKVPKSQKSSSNPLTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPPLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQHKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLIHIFKMLGTPTEENWPGVTSLRDWHVYPRWEPQSLAKNVPSLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF*

>Glyma07g02400.2   sequence type=predicted peptide   gene model=Glyma07g02400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKYEKLEKVGEGTYGKVYKAREKASGSLVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLSVEHVDKVPKSQKSSSNPLTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPPLIQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQHKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLIHIFKMLGTPTEENWPGVTSLRDWHVYPRWEPQSLAKNVPSLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF*

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