SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16060 | AT | Annotation by Michelle Graham. TAIR10: ARIA-interacting double AP2 domain protein | chr1:5508563-5511609 FORWARD LENGTH=345 | SoyBase | E_val: 2.00E-123 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0010187 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination | SoyBase | N/A | ISS |
| GO:0040008 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF332 | Panther | JGI | ISS | ||
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_B9GVV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GVV7_POPTR | SoyBase | E_val: 2.00E-145 | ISS |
| UniRef100_UPI0001BA663A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001BA663A related cluster n=1 Tax=unknown RepID=UPI0001BA663A | SoyBase | E_val: 0 | ISS |
|
Glyma07g02380 not represented in the dataset |
Glyma07g02380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g23630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g021000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g02380.1 sequence type=CDS gene model=Glyma07g02380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAAATCACAGAAAAGCCTCAACAGCACTGGGAAGCGCACACGCAAAAGCGTCCCAAGAGACTCACCTCCACAACGAAGTTCAATCTATAGGGGTGTCACAAGGCATCGATGGACTGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGTATATCTAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTATCAAATTATGAGGAAAAGCTCAAGGAGATGGAGGGCCAGTCAAAAGAAGAATATATTGGATCCTTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGCGTAGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTTGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGCCGCAGCATATGACATGGCAGCAATAGAATACAGAGGACTTAACGCGGTTACAAACTTTGACCTGAGCCGTTATATCAATTGGCCACGTCCTAAAACAGAAGAAAATCATCAAACTATTCCTAGCAATGAAAATGTAAACTCTAATGCTGAACTTGAGCTAGGTTCGGCTAGTGATGAGATCACAGAAGAGGGTGTAGCACCATCTTCAGAATCAAATCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAAAATCAAGATTCAGGCATCTACACTGAAAATGATGATATCATTTTTGGTGACCTGGGCTCCTTTGGTGCACCAATTTTTCATTACGAGCTTGATGTTTAG
>Glyma07g02380.1 sequence type=predicted peptide gene model=Glyma07g02380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKKSQKSLNSTGKRTRKSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLSNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYINWPRPKTEENHQTIPSNENVNSNAELELGSASDEITEEGVAPSSESNPSRRTFPEDIQTIFENQDSGIYTENDDIIFGDLGSFGAPIFHYELDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
