SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G51560 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxamine 5'-phosphate oxidase family protein | chr1:19119900-19121859 REVERSE LENGTH=392 | SoyBase | E_val: 0 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004733 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxamine-phosphate oxidase activity | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG3374 | KOG | Cellular repressor of transcription | JGI | ISS | |
| PTHR13343 | Panther | CREG1 PROTEIN | JGI | ISS | |
| PTHR13343:SF4 | Panther | gb def: cellular repressor of e1a-stimulated genes [drosophila melanogaster] | JGI | ISS | |
| PF01243 | PFAM | Pyridoxamine 5'-phosphate oxidase | JGI | ISS | |
| UniRef100_D7KHT5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: FMN binding protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KHT5_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KGP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KGP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g02340 not represented in the dataset |
Glyma07g02340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g23680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g020600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g02340.2 sequence type=transcript gene model=Glyma07g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTAGTTTGGTGCCCTTTCCATTGTGAAGGAAAATTTAAGCCATTCCGAGACCGAGAGTTCCGAAGATGATCAAGATGCGCCGTCACAAATGGGCATGTCGTGGTCAACGATCACAGCCCCAGCTGGAAGTGGATCGGGTGGTGGCACCAGGGCTGGACTTTTCAGAACACCCATTTCTGGTGGCGTGCAGAGTGCCACCTCAGCTCACGGTTTACCTAGACCGGCTTTAGCAGTACGCAATTTGATGGAGCAGGCAAGATTTGCTCATTTGTGCACTGTAATGTCTCGTATGCACCACCGACGAGAAGGATATCCATTTGGTTCTCTGGTTGATTTTGCACCAGACTCAACGGGTCATCCAATATTTTCATTTTCTCCTCTTGCGATTCACACAAGGAATTTGTTGGCTGACCCAAGATGCACACTGGTTGTCCAGATACCTGGATGGAGTGGCTTGTCCAATGCAAGGGTAACTATTTTTGGGGATGTCTATCCACTTCCAGAAGATCAACAGGAATGGGCTCATAAGCAGTATATTGCGAAGCATCAACAGGGTCCTTCTCAACAATGGGGCAACTTCTACTATTTTAGGATGCAGAATATAAGGGACATATATTTCATTGGAGGCTTTGGTACTGTTGCTTGGGTGGATGTAAAGGAATATGAAACCCTTCAACCTGATAAGATTGCAGTCGATGGTGGTGAACAGTATTTAAAGGAACTCAATGCTATCTTCTCAAAGCCCCTAAAGAAGCTTCTATCTAATGAGACCGAGGTAGATGACGCTGCACTCATATCTATAGACAGCAAAGGAACTGATATTAGGGTCCGTCAAGGTGCCCAGTTCAACATTCAGAGGATATCATTTGATGAAGGACAGAGTGTAGAAACATTGGAAGAAGCTAAAGCTGCTCTTCGGAAATTAATACACAAAGGAAAAGTGTACAATTTGCAGAAATAAGATGTTGGATGTCCTCTTCCCCTTTGACTAGAGTAGACAACAAGATATGGAACCATGCGAGTTTCTAATCGGACTTTAGAATGGTTAATTTTATACATTTTGCCTGGTTGACATGCACCAGACAGTGTATTATATCCATGCATCTGCAAGCATATTTGCTAAAGTCTGATCGTGAGAGGACTTTTTGTGGGCTATACCACCATAGTCAAACTAGAAATAATATATCAGAACTCAATAAATAATAGTATGCTTCTCCCCCCTAAATTCCTCACTTGAATTCCCCTTCCATGCGTGGACTGTAAAATGCCAGCCAAGTTTGATTTAAGTTTGCGTGCTGTATTAGCTGATAGTAAACAATAATCTCAGATTTATAAATAAAACACTCCGCTAATTTCTTAATCAAATGAACATTCATTATCTTTCTACTGGAGAAAGAGATATTTG
>Glyma07g02340.1 sequence type=CDS gene model=Glyma07g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGCACTCTCCTTCATCCCCAAAGACTCTTGCTCACTTCTCCTTCGCCCTCCTTCTTCTTCCTCTGTCAGAACAGCGCCGCCACTTGCTTTCTTCAAAACCACCCAACACTCTCACTCGCACCTTCTCCGTCTTCGCGTTTCTGCTCTCCCAAACACCGACGCCGCCGATGAACCCACCAACGACTTCACCTTGGCGTCTCAACCTCTGGAAAATTTAAGCCATTCCGAGACCGAGAGTTCCGAAGATGATCAAGATGCGCCGTCACAAATGGGCATGTCGTGGTCAACGATCACAGCCCCAGCTGGAAGTGGATCGGGTGGTGGCACCAGGGCTGGACTTTTCAGAACACCCATTTCTGGTGGCGTGCAGAGTGCCACCTCAGCTCACGGTTTACCTAGACCGGCTTTAGCAGTACGCAATTTGATGGAGCAGGCAAGATTTGCTCATTTGTGCACTGTAATGTCTCGTATGCACCACCGACGAGAAGGATATCCATTTGGTTCTCTGGTTGATTTTGCACCAGACTCAACGGGTCATCCAATATTTTCATTTTCTCCTCTTGCGATTCACACAAGGAATTTGTTGGCTGACCCAAGATGCACACTGGTTGTCCAGATACCTGGATGGAGTGGCTTGTCCAATGCAAGGGTAACTATTTTTGGGGATGTCTATCCACTTCCAGAAGATCAACAGGAATGGGCTCATAAGCAGTATATTGCGAAGCATCAACAGGGTCCTTCTCAACAATGGGGCAACTTCTACTATTTTAGGATGCAGAATATAAGGGACATATATTTCATTGGAGGCTTTGGTACTGTTGCTTGGGTGGATGTAAAGGAATATGAAACCCTTCAACCTGATAAGATTGCAGTCGATGGTGGTGAACAGTATTTAAAGGAACTCAATGCTATCTTCTCAAAGCCCCTAAAGAAGCTTCTATCTAATGAGACCGAGGTAGATGACGCTGCACTCATATCTATAGACAGCAAAGGAACTGATATTAGGGTCCGTCAAGGTGCCCAGTTCAACATTCAGAGGATATCATTTGATGAAGGACAGAGTGTAGAAACATTGGAAGAAGCTAAAGCTGCTCTTCGGAAATTAATACACAAAGGAAAAGTGTACAATTTGCAGAAATAA >Glyma07g02340.2 sequence type=CDS gene model=Glyma07g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCATGTCGTGGTCAACGATCACAGCCCCAGCTGGAAGTGGATCGGGTGGTGGCACCAGGGCTGGACTTTTCAGAACACCCATTTCTGGTGGCGTGCAGAGTGCCACCTCAGCTCACGGTTTACCTAGACCGGCTTTAGCAGTACGCAATTTGATGGAGCAGGCAAGATTTGCTCATTTGTGCACTGTAATGTCTCGTATGCACCACCGACGAGAAGGATATCCATTTGGTTCTCTGGTTGATTTTGCACCAGACTCAACGGGTCATCCAATATTTTCATTTTCTCCTCTTGCGATTCACACAAGGAATTTGTTGGCTGACCCAAGATGCACACTGGTTGTCCAGATACCTGGATGGAGTGGCTTGTCCAATGCAAGGGTAACTATTTTTGGGGATGTCTATCCACTTCCAGAAGATCAACAGGAATGGGCTCATAAGCAGTATATTGCGAAGCATCAACAGGGTCCTTCTCAACAATGGGGCAACTTCTACTATTTTAGGATGCAGAATATAAGGGACATATATTTCATTGGAGGCTTTGGTACTGTTGCTTGGGTGGATGTAAAGGAATATGAAACCCTTCAACCTGATAAGATTGCAGTCGATGGTGGTGAACAGTATTTAAAGGAACTCAATGCTATCTTCTCAAAGCCCCTAAAGAAGCTTCTATCTAATGAGACCGAGGTAGATGACGCTGCACTCATATCTATAGACAGCAAAGGAACTGATATTAGGGTCCGTCAAGGTGCCCAGTTCAACATTCAGAGGATATCATTTGATGAAGGACAGAGTGTAGAAACATTGGAAGAAGCTAAAGCTGCTCTTCGGAAATTAATACACAAAGGAAAAGTGTACAATTTGCAGAAATAA
>Glyma07g02340.1 sequence type=predicted peptide gene model=Glyma07g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEALSFIPKDSCSLLLRPPSSSSVRTAPPLAFFKTTQHSHSHLLRLRVSALPNTDAADEPTNDFTLASQPLENLSHSETESSEDDQDAPSQMGMSWSTITAPAGSGSGGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSTGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPEDQQEWAHKQYIAKHQQGPSQQWGNFYYFRMQNIRDIYFIGGFGTVAWVDVKEYETLQPDKIAVDGGEQYLKELNAIFSKPLKKLLSNETEVDDAALISIDSKGTDIRVRQGAQFNIQRISFDEGQSVETLEEAKAALRKLIHKGKVYNLQK* >Glyma07g02340.2 sequence type=predicted peptide gene model=Glyma07g02340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGMSWSTITAPAGSGSGGGTRAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSTGHPIFSFSPLAIHTRNLLADPRCTLVVQIPGWSGLSNARVTIFGDVYPLPEDQQEWAHKQYIAKHQQGPSQQWGNFYYFRMQNIRDIYFIGGFGTVAWVDVKEYETLQPDKIAVDGGEQYLKELNAIFSKPLKKLLSNETEVDDAALISIDSKGTDIRVRQGAQFNIQRISFDEGQSVETLEEAKAALRKLIHKGKVYNLQK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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