SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79820 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr1:30022581-30026771 REVERSE LENGTH=495 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0048439 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower morphogenesis | SoyBase | N/A | ISS |
| GO:0048519 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0254 | KOG | Predicted transporter (major facilitator superfamily) | JGI | ISS | |
| PTHR24063 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24063:SF84 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_I1KGN0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KGN0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2V4B9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable plastidic glucose transporter 3 n=3 Tax=Arabidopsis thaliana RepID=PLST3_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma07g02200 not represented in the dataset |
Glyma07g02200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma08g21860 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g019300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g02200.1 sequence type=CDS gene model=Glyma07g02200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGGGGACGACAGCGAGTGGCATCCAGGGAGCACATACTTGGCCATGATAAAGATGAAAATTTAGCTTCAGTTCGTATACCAAATGCCAAACCTAGTTGGCGGTGCTCTTTGCGACATGTAATTGTGGCTTCTCTTTCTTCATTCTTGTATGGATACCATATTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCTATAGATCTTGGCTTTAGTGGGAATACAATGGCTGAGGGTCTTGTAGTAAGTATATGCTTAGGAGGTGCTTTTATTGGATCTCTGTTCAGTGGATGGATTGCAGATGGTGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTACCTATGATAATCGGGGCTGGAATGAGTGCAACAGCAAAAACTCTGTGGGGCATGCTTTTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGCCCTCCTGTTGCAGCTCTTTATGTGACTGAGGTCTCACCTCCAGCTGTACGAGGTGCTTTTGGGGCCTTAACCCAAATTGCAACATGTCTTGGACTCATGGGTTCTCTCTTTATTGGAATTCCAGCCAAGGAAATAGTTGGCTGGTGGCGGATTTGTTTCTGGGTATCTGTCATTCCTGCTACAATGCTTGCCCTTTTTATGGAGATCTGTGCAGAGAGTCCTCATTGGCTTTTCAAGAGAGGAAGAACCATTGAAGCTGAAGCTGCATTTGAGAAGCTCTTGGGGGGAGTACATGTGAAACCTGCAATGACTGAACTGTCAAAGTCTGACAGAGGTGATGGATCTGATTCAGTAAAACTTTCAGAATTAATCTACGGCCGCTATTTCAGAGTGATGTTCATTGGATCTACACTTTTTGCGCTGCAGCAGCTATCTGGCATAAATGCTGTTTTCTATTTCTCTTCAACTGTCTTTGAAAGTTTTGGTGTACCATCTGATATTGCAAACTCATGTGTAGGAGTTTGCAATTTATTGGGGTCTGTAGTTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCCTGGGTAGCTTTCTGGGCATGGGGTTATCAATGGGTCTACAAGTCATTGCTGCAAGTTCTTTTGCATCTGGATTTGGATCAATGTATCTATCTGTTGGTGGCATGTTACTGTTTGTGCTGTCATTTGCTTTCGGCGCTGGTCCAGTTCCTTCTCTTATCATGTCTGAAATACTACCCGGCAATATCAGAGCAAAGGCAATGGCAATTTGCCTGGCTGTGCATTGGGTGATAAACTTCTTCGTGGGTCTATTTTTTTTGCGCTTGCTGGAGCTAATTGGGGCGCAACTCCTGTATAGTATTTTTGGTTCATGTTGTTTGATAGCGGTGGTTTTTGTGAAGAAATATATTCTGGAAACAAAAGGGAAGTCACTTCAGGAAATTGAAATTGCACTTCTTGCACAAGAAGCAAACTAA
>Glyma07g02200.1 sequence type=predicted peptide gene model=Glyma07g02200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGRQRVASREHILGHDKDENLASVRIPNAKPSWRCSLRHVIVASLSSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFIGSLFSGWIADGVGRRRSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVAALYVTEVSPPAVRGAFGALTQIATCLGLMGSLFIGIPAKEIVGWWRICFWVSVIPATMLALFMEICAESPHWLFKRGRTIEAEAAFEKLLGGVHVKPAMTELSKSDRGDGSDSVKLSELIYGRYFRVMFIGSTLFALQQLSGINAVFYFSSTVFESFGVPSDIANSCVGVCNLLGSVVAMILMDKLGRKVLLLGSFLGMGLSMGLQVIAASSFASGFGSMYLSVGGMLLFVLSFAFGAGPVPSLIMSEILPGNIRAKAMAICLAVHWVINFFVGLFFLRLLELIGAQLLYSIFGSCCLIAVVFVKKYILETKGKSLQEIEIALLAQEAN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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